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Protein

N utilization substance protein B homolog

Gene

nusB

Organism
Aquifex aeolicus (strain VF5)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the transcription termination process.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation, Transcription termination

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciAAEO224324:GJBH-105-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
N utilization substance protein B homolog
Short name:
Protein NusB
Gene namesi
Name:nusB
Ordered Locus Names:aq_133
OrganismiAquifex aeolicus (strain VF5)
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 148148N utilization substance protein B homologPRO_0000176504Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi224324.aq_133.

Structurei

Secondary structure

1
148
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi3 – 2119Combined sources
Helixi25 – 3612Combined sources
Helixi41 – 5616Combined sources
Helixi58 – 669Combined sources
Turni67 – 715Combined sources
Helixi74 – 763Combined sources
Helixi79 – 9214Combined sources
Turni93 – 953Combined sources
Helixi100 – 11415Combined sources
Helixi117 – 13721Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2JR0NMR-A1-148[»]
3R2CX-ray1.90A/B1-148[»]
3R2DX-ray2.20A/B1-148[»]
4EYAX-ray3.20A/B/C/D/E/F/G/H1-148[»]
ProteinModelPortaliO66530.
SMRiO66530. Positions 1-148.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO66530.

Family & Domainsi

Sequence similaritiesi

Belongs to the NusB family.Curated

Phylogenomic databases

eggNOGiENOG41082MB. Bacteria.
COG0781. LUCA.
HOGENOMiHOG000281867.
InParanoidiO66530.
KOiK03625.
OMAiARHMERW.
OrthoDBiPOG091H04JC.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
HAMAPiMF_00073. NusB. 1 hit.
InterProiIPR011605. NusB_fam.
IPR006027. NusB_RsmB_TIM44.
[Graphical view]
PANTHERiPTHR11078. PTHR11078. 1 hit.
PfamiPF01029. NusB. 1 hit.
[Graphical view]
SUPFAMiSSF48013. SSF48013. 1 hit.
TIGRFAMsiTIGR01951. nusB. 1 hit.

Sequencei

Sequence statusi: Complete.

O66530-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRYRKGARDT AFLVLYRWDL RGENPGELFK EVVEEKNIKN KDAYEYAKKL
60 70 80 90 100
VDTAVRHIEE IDSIIEKHLK GWSIDRLGYV ERNALRLGVA ELIFLKSKEP
110 120 130 140
GRVFIDIVDL VKKYADEKAG KFVNGVLSAI YKAYITSSKE EKPSLKSE
Length:148
Mass (Da):17,112
Last modified:August 1, 1998 - v1
Checksum:i6297579CA996E22F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC06491.1.
PIRiG70312.
RefSeqiNP_213090.1. NC_000918.1.
WP_010880028.1. NC_000918.1.

Genome annotation databases

EnsemblBacteriaiAAC06491; AAC06491; aq_133.
GeneIDi1192673.
KEGGiaae:aq_133.
PATRICi20957944. VBIAquAeo85532_0112.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC06491.1.
PIRiG70312.
RefSeqiNP_213090.1. NC_000918.1.
WP_010880028.1. NC_000918.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2JR0NMR-A1-148[»]
3R2CX-ray1.90A/B1-148[»]
3R2DX-ray2.20A/B1-148[»]
4EYAX-ray3.20A/B/C/D/E/F/G/H1-148[»]
ProteinModelPortaliO66530.
SMRiO66530. Positions 1-148.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224324.aq_133.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC06491; AAC06491; aq_133.
GeneIDi1192673.
KEGGiaae:aq_133.
PATRICi20957944. VBIAquAeo85532_0112.

Phylogenomic databases

eggNOGiENOG41082MB. Bacteria.
COG0781. LUCA.
HOGENOMiHOG000281867.
InParanoidiO66530.
KOiK03625.
OMAiARHMERW.
OrthoDBiPOG091H04JC.

Enzyme and pathway databases

BioCyciAAEO224324:GJBH-105-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO66530.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
HAMAPiMF_00073. NusB. 1 hit.
InterProiIPR011605. NusB_fam.
IPR006027. NusB_RsmB_TIM44.
[Graphical view]
PANTHERiPTHR11078. PTHR11078. 1 hit.
PfamiPF01029. NusB. 1 hit.
[Graphical view]
SUPFAMiSSF48013. SSF48013. 1 hit.
TIGRFAMsiTIGR01951. nusB. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiNUSB_AQUAE
AccessioniPrimary (citable) accession number: O66530
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: August 1, 1998
Last modified: September 7, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.