O66474 (RS6_AQUAE) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
30S ribosomal protein S6

Gene names

Name:	rpsF
Ordered Locus Names:	aq_063

Organism

Aquifex aeolicus (strain VF5)

Taxonomic identifier

224324 [NCBI]

Taxonomic lineage

Bacteria › Aquificae › Aquificales › Aquificaceae › Aquifex

Protein attributes

Sequence length	110 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Binds together with S18 to 16S ribosomal RNA By similarity. HAMAP MF_00360
Sequence similarities	Belongs to the ribosomal protein S6P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 110

110

30S ribosomal protein S6 HAMAP MF_00360

PRO_0000176716

Secondary structure

1

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110

Helix Strand Turn

Details...

Beta strand

8 – 16

9

Helix

22 – 38

17

Beta strand

41 – 53

13

Beta strand

58 – 60

3

Beta strand

62 – 74

13

Helix

78 – 88

11

Beta strand

92 – 100

9

Helix

102 – 104

3

Sequences

	Sequence		Length	Mass (Da)
	O66474 [UniParc]. Last modified August 1, 1998. Version 1. Checksum: ABEFC5952C4DF4D9	FASTA	110	13,473
	10 20 30 40 50 60 MRHYKTLRYY ETVFAVKPTL SEEEMKKKFE QVKEFIKQKG GEILYEEDWG MRQLAYPIQK 70 80 90 100 110 FNNARYFLVQ FKTENPQLPN ELDFQLKIDE DVIRWLNFQI KESEVKKNAQ

References

[1]	"The complete genome of the hyperthermophilic bacterium Aquifex aeolicus." Deckert G., Warren P.V., Gaasterland T., Young W.G., Lenox A.L., Graham D.E., Overbeek R., Snead M.A., Keller M., Aujay M., Huber R., Feldman R.A., Short J.M., Olsen G.J., Swanson R.V. Nature 392:353-358(1998) [PubMed: 9537320] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: VF5.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE000657 Genomic DNA. Translation: AAC06443.1.

PIR

G70305.

RefSeq

NP_213034.1. NC_000918.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2J5A	X-ray	2.30	A	1-110	[»]

ProteinModelPortal

O66474.

SMR

O66474. Positions 3-108.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

1192487.

GenomeReviews

Gene locus aq_063 in contig AE000657_GR.

KEGG

aae:aq_063.

NMPDR

fig|224324.1.peg.49.

PATRIC

20957821. VBIAquAeo85532_0051.

Phylogenomic databases

HOGENOM

HBG747554.

OMA

MVESKDW.

PhylomeDB

O66474.

ProtClustDB

PRK00453.

Enzyme and pathway databases

BioCyc

AAEO224324:AQ_063-MONOMER.

Family and domain databases

HAMAP

MF_00360. Ribosomal_S6.
[Tree]

InterPro

IPR000529. Ribosomal_S6.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view]

Gene3D

G3DSA:3.30.70.60. Transl_elong_EF1B/rib_con. 1 hit.

KO

K02990.

Pfam

PF01250. Ribosomal_S6. 1 hit.
[Graphical view]

SUPFAM

SSF54995. Ribosomal_S6. 1 hit.

TIGRFAMs

TIGR00166. S6. 1 hit.

PROSITE

PS01048. RIBOSOMAL_S6. False negative.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

RS6_AQUAE

Accession

Primary (citable) accession number: O66474

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 30, 2000
Last sequence update:	August 1, 1998
Last modified:	January 25, 2012
This is version 67 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program