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Protein

30S ribosomal protein S10

Gene

rpsJ

Organism
Aquifex aeolicus (strain VF5)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the binding of tRNA to the ribosomes.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciAAEO224324:GJBH-3-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S10UniRule annotation
Gene namesi
Name:rpsJUniRule annotation
Ordered Locus Names:aq_008
OrganismiAquifex aeolicus (strain VF5)
Taxonomic identifieri224324 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeAquifex
Proteomesi
  • UP000000798 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10410430S ribosomal protein S10PRO_0000146487Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi224324.aq_008.

Structurei

Secondary structure

1
104
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi6 – 138Combined sources
Helixi15 – 3117Combined sources
Beta strandi35 – 4511Combined sources
Beta strandi69 – 7810Combined sources
Helixi81 – 888Combined sources
Beta strandi97 – 1015Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3R2CX-ray1.90J/K1-46[»]
J/K69-104[»]
3R2DX-ray2.20J/K1-46[»]
J/K69-104[»]
ProteinModelPortaliO66430.
SMRiO66430. Positions 4-102.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S10P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108Z10. Bacteria.
COG0051. LUCA.
HOGENOMiHOG000270246.
InParanoidiO66430.
KOiK02946.
OMAiQQKIRIK.
OrthoDBiPOG091H014M.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SMARTiSM01403. Ribosomal_S10. 1 hit.
[Graphical view]
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O66430-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEQEKIRIKL RAYDHRLLDQ SVKQIIETVK RTGGVVKGPI PLPTRKRKWC
60 70 80 90 100
VLRSPHKFDQ SREHFEIREF SRILDIIRFT PQTIEALMEI SLPAGVDVEV

KMRG
Length:104
Mass (Da):12,235
Last modified:August 1, 1998 - v1
Checksum:i9946B8CC6ECDF356
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC06399.1.
PIRiC70300.
RefSeqiNP_212988.1. NC_000918.1.
WP_010879926.1. NC_000918.1.

Genome annotation databases

EnsemblBacteriaiAAC06399; AAC06399; aq_008.
GeneIDi1192535.
KEGGiaae:aq_008.
PATRICi20957725. VBIAquAeo85532_0003.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000657 Genomic DNA. Translation: AAC06399.1.
PIRiC70300.
RefSeqiNP_212988.1. NC_000918.1.
WP_010879926.1. NC_000918.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3R2CX-ray1.90J/K1-46[»]
J/K69-104[»]
3R2DX-ray2.20J/K1-46[»]
J/K69-104[»]
ProteinModelPortaliO66430.
SMRiO66430. Positions 4-102.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224324.aq_008.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC06399; AAC06399; aq_008.
GeneIDi1192535.
KEGGiaae:aq_008.
PATRICi20957725. VBIAquAeo85532_0003.

Phylogenomic databases

eggNOGiENOG4108Z10. Bacteria.
COG0051. LUCA.
HOGENOMiHOG000270246.
InParanoidiO66430.
KOiK02946.
OMAiQQKIRIK.
OrthoDBiPOG091H014M.

Enzyme and pathway databases

BioCyciAAEO224324:GJBH-3-MONOMER.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SMARTiSM01403. Ribosomal_S10. 1 hit.
[Graphical view]
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS10_AQUAE
AccessioniPrimary (citable) accession number: O66430
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: August 1, 1998
Last modified: September 7, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.