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Protein

Putative F-box/kelch-repeat protein At4g19330

Gene

At4g19330

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Biological processi

  • response to cold Source: UniProtKB
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Putative F-box/kelch-repeat protein At4g19330
Gene namesi
Ordered Locus Names:At4g19330
ORF Names:T5K18.110
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G19330.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 537537Putative F-box/kelch-repeat protein At4g19330PRO_0000283243Add
BLAST

Proteomic databases

PaxDbiO65704.

Expressioni

Gene expression databases

GenevisibleiO65704. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G19330.1.

Structurei

3D structure databases

ProteinModelPortaliO65704.
SMRiO65704. Positions 285-392.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini174 – 22148F-boxAdd
BLAST
Repeati292 – 33746Kelch 1Add
BLAST
Repeati338 – 38447Kelch 2Add
BLAST
Repeati424 – 47047Kelch 3Add
BLAST

Sequence similaritiesi

Contains 1 F-box domain.Curated
Contains 3 Kelch repeats.Curated

Keywords - Domaini

Kelch repeat, Repeat

Phylogenomic databases

eggNOGiKOG1072. Eukaryota.
KOG1073. Eukaryota.
ENOG4110X8D. LUCA.
HOGENOMiHOG000242515.
InParanoidiO65704.
OMAiTHWTIDI.
PhylomeDBiO65704.

Family and domain databases

Gene3Di2.130.10.80. 1 hit.
InterProiIPR001810. F-box_dom.
IPR015916. Gal_Oxidase_b-propeller.
IPR006652. Kelch_1.
IPR025609. Lsm14_N.
IPR010920. LSM_dom.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF01344. Kelch_1. 2 hits.
PF12701. LSM14. 2 hits.
[Graphical view]
SMARTiSM00612. Kelch. 2 hits.
SM01271. LSM14. 2 hits.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 2 hits.

Sequencei

Sequence statusi: Complete.

O65704-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MERETSSSST PPEDLVTSMI GKFVAVMSNN DIRYEGVISL LNLQDSKLGL
60 70 80 90 100
QNGNNSIPNP LQDLLFMIFF FSIVRVYGRE VENDNEQRVF QVLKEVHSHM
110 120 130 140 150
VFRGSDIKSV EVLSLPPPAR HNSAIGHVGS LITTEDVRIE GVISHVKFHD
160 170 180 190 200
SMIFMKNCMC YGTEGRTKRR RSIVACNQLA DDIVLNILAR ISTSYYQTLS
210 220 230 240 250
LVSKTFRLLI LSKELDMERS YLGTRKPCVY VCLQSPTHPF DRRWFGLWIK
260 270 280 290 300
PYDHQPLTHW TIDIKCTGHW LLPMPSPYSR CLQIVHETVG SETYEIGGQN
310 320 330 340 350
MTPSTDVWVY DKLIGKQRKA PSMMVARKNA FTCVLDGKLY VMGGCEADES
360 370 380 390 400
THWAEVFDPK TQTWEALPDP GVELRYSSVK NIQTKQGKVY VRSNKKNFVY
410 420 430 440 450
LIKECMWEVA EENLGESTCE IENVCYCYSN KRYWWYDAKC EEWRLVKGNY
460 470 480 490 500
GGKLVVFWDR AVSRLTATKE IWCAMISLEK GHDGEIWGHI EWLDAVLIAP
510 520 530
RSLKLIIQLV LIRTIYIIDI YSFLFSVMFF ILYFIYI
Length:537
Mass (Da):61,998
Last modified:August 1, 1998 - v1
Checksum:iC8BB7506A4DBF37D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022580 Genomic DNA. Translation: CAA18620.1.
AL161550 Genomic DNA. Translation: CAB78935.1.
CP002687 Genomic DNA. Translation: AEE84168.1.
PIRiT05816.
RefSeqiNP_193668.1. NM_118053.1.
UniGeneiAt.54407.

Genome annotation databases

EnsemblPlantsiAT4G19330.1; AT4G19330.1; AT4G19330.
GeneIDi827674.
GrameneiAT4G19330.1; AT4G19330.1; AT4G19330.
KEGGiath:AT4G19330.

Cross-referencesi

Web resourcesi

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022580 Genomic DNA. Translation: CAA18620.1.
AL161550 Genomic DNA. Translation: CAB78935.1.
CP002687 Genomic DNA. Translation: AEE84168.1.
PIRiT05816.
RefSeqiNP_193668.1. NM_118053.1.
UniGeneiAt.54407.

3D structure databases

ProteinModelPortaliO65704.
SMRiO65704. Positions 285-392.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G19330.1.

Proteomic databases

PaxDbiO65704.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G19330.1; AT4G19330.1; AT4G19330.
GeneIDi827674.
GrameneiAT4G19330.1; AT4G19330.1; AT4G19330.
KEGGiath:AT4G19330.

Organism-specific databases

TAIRiAT4G19330.

Phylogenomic databases

eggNOGiKOG1072. Eukaryota.
KOG1073. Eukaryota.
ENOG4110X8D. LUCA.
HOGENOMiHOG000242515.
InParanoidiO65704.
OMAiTHWTIDI.
PhylomeDBiO65704.

Miscellaneous databases

PROiO65704.

Gene expression databases

GenevisibleiO65704. AT.

Family and domain databases

Gene3Di2.130.10.80. 1 hit.
InterProiIPR001810. F-box_dom.
IPR015916. Gal_Oxidase_b-propeller.
IPR006652. Kelch_1.
IPR025609. Lsm14_N.
IPR010920. LSM_dom.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF01344. Kelch_1. 2 hits.
PF12701. LSM14. 2 hits.
[Graphical view]
SMARTiSM00612. Kelch. 2 hits.
SM01271. LSM14. 2 hits.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 2 hits.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.

Entry informationi

Entry nameiFBK83_ARATH
AccessioniPrimary (citable) accession number: O65704
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 3, 2007
Last sequence update: August 1, 1998
Last modified: May 11, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.