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Protein

F-box/kelch-repeat protein At4g19330

Gene

CTG10

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Involved in seed germination.1 Publication

GO - Biological processi

  • response to cold Source: UniProtKB
  • seed germination Source: UniProtKB

Names & Taxonomyi

Protein namesi
Recommended name:
F-box/kelch-repeat protein At4g19330
Alternative name(s):
Protein COLD TEMPERATURE GERMINATING 10Imported
Gene namesi
Name:CTG10Imported
Ordered Locus Names:At4g19330
ORF Names:T5K18.110Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G19330
TAIRilocus:2140336 AT4G19330

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002832431 – 383F-box/kelch-repeat protein At4g19330Add BLAST383

Proteomic databases

PaxDbiO65704

Expressioni

Gene expression databases

GenevisibleiO65704 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G19330.1

Structurei

3D structure databases

ProteinModelPortaliO65704
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini28 – 79F-boxPROSITE-ProRule annotationAdd BLAST52
Repeati147 – 192Kelch 1Sequence analysisAdd BLAST46
Repeati193 – 239Kelch 2Sequence analysisAdd BLAST47
Repeati272 – 318Kelch 3Sequence analysisAdd BLAST47

Keywords - Domaini

Kelch repeat, Repeat

Phylogenomic databases

eggNOGiKOG1072 Eukaryota
KOG1073 Eukaryota
ENOG4110X8D LUCA
HOGENOMiHOG000242515
InParanoidiO65704
OMAiGESECWA
OrthoDBiEOG09360GEW
PhylomeDBiO65704

Family and domain databases

Gene3Di2.120.10.80, 1 hit
InterProiView protein in InterPro
IPR001810 F-box_dom
IPR015915 Kelch-typ_b-propeller
IPR006652 Kelch_1
PfamiView protein in Pfam
PF00646 F-box, 1 hit
PF01344 Kelch_1, 2 hits
SMARTiView protein in SMART
SM00256 FBOX, 1 hit
SM00612 Kelch, 2 hits
PROSITEiView protein in PROSITE
PS50181 FBOX, 1 hit

Sequencei

Sequence statusi: Complete.

O65704-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAYLSFKSNM ERTPRESNTP CPPPQPSPSL FSSLPDDIVL NILARISTSY
60 70 80 90 100
YQTLSLVSKT FRLLILSKEL DMERSYLGTR KPCVYVCLQS PTHPFDRRWF
110 120 130 140 150
GLWIKPYDHQ PLTHWTIDIK CTGHWLLPMP SPYSRCLQIV HETVGSETYE
160 170 180 190 200
IGGQNMTPST DVWVYDKLIG KQRKAPSMMV ARKNAFTCVL DGKLYVMGGC
210 220 230 240 250
EADESTHWAE VFDPKTQTWE ALPDPGVELR YSSVKNIQTK QGKVYVRSNK
260 270 280 290 300
KNFVYLIKEC MWEVAEENLG ESTCEIENVC YCYSNKRYWW YDAKCEEWRL
310 320 330 340 350
VKGVSGLYEY YKTDSEIGNY GGKLVVFWDR AVSRLTATKE IWCAMISLEK
360 370 380
GHDGEIWGHI EWLDAVLIAP RSYALSHCMD FLQ
Length:383
Mass (Da):44,319
Last modified:February 28, 2018 - v2
Checksum:i729EFBD7BA50C525
GO

Sequence cautioni

The sequence CAA18620 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene has been split into 2 genes: At4g19275 and At4g19330.1 Publication
The sequence CAB78935 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene has been split into 2 genes: At4g19275 and At4g19330.1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ666277 Genomic DNA Translation: ABG75719.1
AL022580 Genomic DNA Translation: CAA18620.1 Sequence problems.
AL161550 Genomic DNA Translation: CAB78935.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE84168.2
PIRiT05816
RefSeqiNP_001319995.1, NM_001341333.1

Genome annotation databases

EnsemblPlantsiAT4G19330.1; AT4G19330.1; AT4G19330
GeneIDi28720147
GrameneiAT4G19330.1; AT4G19330.1; AT4G19330
KEGGiath:AT4G19330

Similar proteinsi

Entry informationi

Entry nameiFBK83_ARATH
AccessioniPrimary (citable) accession number: O65704
Secondary accession number(s): C6EMZ0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 3, 2007
Last sequence update: February 28, 2018
Last modified: April 25, 2018
This is version 105 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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