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Protein

Ethylene-responsive transcription factor ERF060

Gene

ERF060

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi92 – 149AP2/ERFPROSITE-ProRule annotationAdd BLAST58

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processEthylene signaling pathway, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor ERF060
Gene namesi
Name:ERF060
Ordered Locus Names:At4g39780
ORF Names:T19P19.170
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G39780.
TAIRilocus:2135282. AT4G39780.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002903981 – 272Ethylene-responsive transcription factor ERF060Add BLAST272

Proteomic databases

PaxDbiO65665.

Expressioni

Gene expression databases

GenevisibleiO65665. AT.

Interactioni

Protein-protein interaction databases

IntActiO65665. 6 interactors.
MINTiMINT-7263056.
STRINGi3702.AT4G39780.1.

Structurei

3D structure databases

ProteinModelPortaliO65665.
SMRiO65665.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG410IEJE. Eukaryota.
ENOG410YGN6. LUCA.
HOGENOMiHOG000239817.
InParanoidiO65665.
OMAiYIRHEYG.
OrthoDBiEOG09360MOF.
PhylomeDBiO65665.

Family and domain databases

CDDicd00018. AP2. 1 hit.
Gene3Di3.30.730.10. 1 hit.
InterProiView protein in InterPro
IPR001471. AP2/ERF_dom.
IPR036955. AP2/ERF_dom_sf.
IPR016177. DNA-bd_dom_sf.
PfamiView protein in Pfam
PF00847. AP2. 1 hit.
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiView protein in SMART
SM00380. AP2. 1 hit.
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiView protein in PROSITE
PS51032. AP2_ERF. 1 hit.

Sequencei

Sequence statusi: Complete.

O65665-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAIDMFNSN TDPFQEELMK ALQPYTTNTD SSSPTYSNTV FGFNQTTSLG
60 70 80 90 100
LNQLTPYQIH QIQNQLNQRR NIISPNLAPK PVPMKNMTAQ KLYRGVRQRH
110 120 130 140 150
WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ
160 170 180 190 200
FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
210 220 230 240 250
KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS
260 270
FGLEKFPSVE IDWDAISKLS ES
Length:272
Mass (Da):30,951
Last modified:August 1, 1998 - v1
Checksum:iD489F44CFDD6D6F3
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti265A → P in AAT44917 (Ref. 1) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY560850 mRNA. Translation: AAT44917.1.
AL022605 Genomic DNA. Translation: CAA18764.1.
AL161595 Genomic DNA. Translation: CAB80641.1.
CP002687 Genomic DNA. Translation: AEE87118.1.
BT025719 mRNA. Translation: ABF82622.1.
PIRiT05015.
RefSeqiNP_195688.1. NM_120141.6.
UniGeneiAt.2297.

Genome annotation databases

EnsemblPlantsiAT4G39780.1; AT4G39780.1; AT4G39780.
GeneIDi830136.
GrameneiAT4G39780.1; AT4G39780.1; AT4G39780.
KEGGiath:AT4G39780.

Similar proteinsi

Entry informationi

Entry nameiERF60_ARATH
AccessioniPrimary (citable) accession number: O65665
Secondary accession number(s): Q6J9S5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: August 1, 1998
Last modified: November 22, 2017
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families