Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Ethylene-responsive transcription factor ERF060

Gene

ERF060

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi92 – 14958AP2/ERFPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Ethylene signaling pathway, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor ERF060
Gene namesi
Name:ERF060
Ordered Locus Names:At4g39780
ORF Names:T19P19.170
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G39780.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 272272Ethylene-responsive transcription factor ERF060PRO_0000290398Add
BLAST

Proteomic databases

PaxDbiO65665.
PRIDEiO65665.

Expressioni

Gene expression databases

GenevisibleiO65665. AT.

Interactioni

Protein-protein interaction databases

IntActiO65665. 1 interaction.
MINTiMINT-7263056.
STRINGi3702.AT4G39780.1.

Structurei

3D structure databases

ProteinModelPortaliO65665.
SMRiO65665. Positions 91-149.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410IEJE. Eukaryota.
ENOG410YGN6. LUCA.
HOGENOMiHOG000239817.
InParanoidiO65665.
OMAiTEYQESE.
OrthoDBiEOG09360MOF.
PhylomeDBiO65665.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O65665-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAIDMFNSN TDPFQEELMK ALQPYTTNTD SSSPTYSNTV FGFNQTTSLG
60 70 80 90 100
LNQLTPYQIH QIQNQLNQRR NIISPNLAPK PVPMKNMTAQ KLYRGVRQRH
110 120 130 140 150
WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ
160 170 180 190 200
FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
210 220 230 240 250
KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS
260 270
FGLEKFPSVE IDWDAISKLS ES
Length:272
Mass (Da):30,951
Last modified:August 1, 1998 - v1
Checksum:iD489F44CFDD6D6F3
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti265 – 2651A → P in AAT44917 (Ref. 1) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY560850 mRNA. Translation: AAT44917.1.
AL022605 Genomic DNA. Translation: CAA18764.1.
AL161595 Genomic DNA. Translation: CAB80641.1.
CP002687 Genomic DNA. Translation: AEE87118.1.
BT025719 mRNA. Translation: ABF82622.1.
PIRiT05015.
RefSeqiNP_195688.1. NM_120141.5.
UniGeneiAt.2297.

Genome annotation databases

EnsemblPlantsiAT4G39780.1; AT4G39780.1; AT4G39780.
GeneIDi830136.
GrameneiAT4G39780.1; AT4G39780.1; AT4G39780.
KEGGiath:AT4G39780.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY560850 mRNA. Translation: AAT44917.1.
AL022605 Genomic DNA. Translation: CAA18764.1.
AL161595 Genomic DNA. Translation: CAB80641.1.
CP002687 Genomic DNA. Translation: AEE87118.1.
BT025719 mRNA. Translation: ABF82622.1.
PIRiT05015.
RefSeqiNP_195688.1. NM_120141.5.
UniGeneiAt.2297.

3D structure databases

ProteinModelPortaliO65665.
SMRiO65665. Positions 91-149.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO65665. 1 interaction.
MINTiMINT-7263056.
STRINGi3702.AT4G39780.1.

Proteomic databases

PaxDbiO65665.
PRIDEiO65665.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G39780.1; AT4G39780.1; AT4G39780.
GeneIDi830136.
GrameneiAT4G39780.1; AT4G39780.1; AT4G39780.
KEGGiath:AT4G39780.

Organism-specific databases

TAIRiAT4G39780.

Phylogenomic databases

eggNOGiENOG410IEJE. Eukaryota.
ENOG410YGN6. LUCA.
HOGENOMiHOG000239817.
InParanoidiO65665.
OMAiTEYQESE.
OrthoDBiEOG09360MOF.
PhylomeDBiO65665.

Miscellaneous databases

PROiO65665.

Gene expression databases

GenevisibleiO65665. AT.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiERF60_ARATH
AccessioniPrimary (citable) accession number: O65665
Secondary accession number(s): Q6J9S5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: August 1, 1998
Last modified: September 7, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.