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Protein
Submitted name:

Pathogenesis-related thaumatin family protein

Gene

T19K4.140

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Pathogenesis-related thaumatin family proteinImported
Submitted name:
Putative thaumatin proteinImported
Submitted name:
Thaumatin-like proteinImported
Gene namesi
Name:T19K4.140Imported
Ordered Locus Names:At4g36010Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G36010.

Subcellular locationi

GO - Cellular componenti

  • anchored component of membrane Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 301279Sequence analysisPRO_5006739241Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G36010.1.

Structurei

3D structure databases

SMRiO65638. Positions 26-250.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410IGUJ. Eukaryota.
ENOG4111KEV. LUCA.
HOGENOMiHOG000238454.
OMAiTIACKSA.
PhylomeDBiO65638.

Family and domain databases

Gene3Di2.60.110.10. 1 hit.
InterProiIPR001938. Thaumatin.
[Graphical view]
PANTHERiPTHR31048. PTHR31048. 1 hit.
PfamiPF00314. Thaumatin. 1 hit.
[Graphical view]
PIRSFiPIRSF002703. Thaumatin. 1 hit.
PRINTSiPR00347. THAUMATIN.
SMARTiSM00205. THN. 1 hit.
[Graphical view]
SUPFAMiSSF49870. SSF49870. 1 hit.
PROSITEiPS51367. THAUMATIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O65638-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGQSQVSLFL LLILVFIYGV SSTTFTIVNQ CSYTVWPGLL SGAGTSPLPT
60 70 80 90 100
TGFSLNPTET RVIPIPAAWS GRIWGRTLCT QDATTGRFTC ITGDCGSSTV
110 120 130 140 150
ECSGSGAAPP ATLAEFTLNG ANGLDFYDVS LVDGYNIPMT IVPQGGGDAG
160 170 180 190 200
GVAGNCTTTG CVAELNGPCP AQLKVATTGA EGVACKSACE AFGTPEYCCS
210 220 230 240 250
GAFGTPDTCK PSEYSQFFKN ACPRAYSYAY DDGTSTFTCG GADYVITFCP
260 270 280 290 300
SPNPSVKSAT KGVQPVAVSY SKASPNASPT LSAVFSIGVL AVASWVMQRV

L
Length:301
Mass (Da):30,906
Last modified:August 1, 1998 - v1
Checksum:i8375AAA47036DF70
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF360165 mRNA. Translation: AAK25875.1.
AY113913 mRNA. Translation: AAM44961.1.
CP002687 Genomic DNA. Translation: AEE86601.1.
CP002687 Genomic DNA. Translation: AEE86602.1.
AL022373 Genomic DNA. Translation: CAA18495.1.
AL161588 Genomic DNA. Translation: CAB81510.1.
PIRiT05493.
RefSeqiNP_001031792.1. NM_001036715.1.
NP_195325.1. NM_119768.1.
UniGeneiAt.2222.

Genome annotation databases

EnsemblPlantsiAT4G36010.1; AT4G36010.1; AT4G36010.
AT4G36010.2; AT4G36010.2; AT4G36010.
GeneIDi829757.
GrameneiAT4G36010.1; AT4G36010.1; AT4G36010.
AT4G36010.2; AT4G36010.2; AT4G36010.
KEGGiath:AT4G36010.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF360165 mRNA. Translation: AAK25875.1.
AY113913 mRNA. Translation: AAM44961.1.
CP002687 Genomic DNA. Translation: AEE86601.1.
CP002687 Genomic DNA. Translation: AEE86602.1.
AL022373 Genomic DNA. Translation: CAA18495.1.
AL161588 Genomic DNA. Translation: CAB81510.1.
PIRiT05493.
RefSeqiNP_001031792.1. NM_001036715.1.
NP_195325.1. NM_119768.1.
UniGeneiAt.2222.

3D structure databases

SMRiO65638. Positions 26-250.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G36010.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G36010.1; AT4G36010.1; AT4G36010.
AT4G36010.2; AT4G36010.2; AT4G36010.
GeneIDi829757.
GrameneiAT4G36010.1; AT4G36010.1; AT4G36010.
AT4G36010.2; AT4G36010.2; AT4G36010.
KEGGiath:AT4G36010.

Organism-specific databases

TAIRiAT4G36010.

Phylogenomic databases

eggNOGiENOG410IGUJ. Eukaryota.
ENOG4111KEV. LUCA.
HOGENOMiHOG000238454.
OMAiTIACKSA.
PhylomeDBiO65638.

Family and domain databases

Gene3Di2.60.110.10. 1 hit.
InterProiIPR001938. Thaumatin.
[Graphical view]
PANTHERiPTHR31048. PTHR31048. 1 hit.
PfamiPF00314. Thaumatin. 1 hit.
[Graphical view]
PIRSFiPIRSF002703. Thaumatin. 1 hit.
PRINTSiPR00347. THAUMATIN.
SMARTiSM00205. THN. 1 hit.
[Graphical view]
SUPFAMiSSF49870. SSF49870. 1 hit.
PROSITEiPS51367. THAUMATIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Bevan M., Wedler H., Wambutt R., Hoheisel J., Jesse T., Heijnen L., Vos P., Mewes H.W., Mayer K., Schueller C.
    Submitted (APR-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. EU Arabidopsis sequencing project
    Submitted (APR-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    EU, CSHL and WU Arabidopsis Sequencing Project
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  4. EU Arabidopsis sequencing project
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  5. Wedler H., Wambutt R., Mewes H.W., Lemcke K., Mayer K.F.X.
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. Cited for: NUCLEOTIDE SEQUENCE.
  7. Cited for: NUCLEOTIDE SEQUENCE.
  8. TAIR10
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiO65638_ARATH
AccessioniPrimary (citable) accession number: O65638
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: April 13, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.