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Protein

40S ribosomal protein S11-2

Gene

RPS11B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • rRNA binding Source: UniProtKB-KW
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S11-2
Gene namesi
Name:RPS11B
Ordered Locus Names:At4g30800
ORF Names:F6I18.290
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G30800
TAIRilocus:2126639 AT4G30800

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001285161 – 15940S ribosomal protein S11-2Add BLAST159

Proteomic databases

PaxDbiO65569
PRIDEiO65569

PTM databases

iPTMnetiO65569

Expressioni

Gene expression databases

ExpressionAtlasiO65569 baseline and differential
GenevisibleiO65569 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G30800.1

Structurei

3D structure databases

ProteinModelPortaliO65569
SMRiO65569
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1728 Eukaryota
COG0186 LUCA
HOGENOMiHOG000231341
InParanoidiO65569
KOiK02949
OMAiKKYERYE
OrthoDBiEOG09360QR2
PhylomeDBiO65569

Family and domain databases

InterProiView protein in InterPro
IPR012340 NA-bd_OB-fold
IPR032440 Ribosomal_S11_N
IPR000266 Ribosomal_S17/S11
IPR028333 Ribosomal_S17_arc-typ
IPR019979 Ribosomal_S17_CS
PANTHERiPTHR10744 PTHR10744, 1 hit
PfamiView protein in Pfam
PF00366 Ribosomal_S17, 1 hit
PF16205 Ribosomal_S17_N, 1 hit
PRINTSiPR00973 RIBOSOMALS17
ProDomiView protein in ProDom or Entries sharing at least one domain
PD001295 Ribosomal_S17, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR03630 uS17_arch, 1 hit
PROSITEiView protein in PROSITE
PS00056 RIBOSOMAL_S17, 1 hit

Sequencei

Sequence statusi: Complete.

O65569-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI
60 70 80 90 100
EGTYIDQKCP FTGTVSIRGR ILSGTCHSAK MQRTIIVRRD YLHFVKKYRR
110 120 130 140 150
YEKRHSNIPA HVSPCFRVKE GDRVTIGQCR PLSKTVRFNV LKVIPAGSSS

IGKKAFTGM
Length:159
Mass (Da):17,931
Last modified:May 1, 2000 - v2
Checksum:iAA00D4FC99632B73
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022198 Genomic DNA Translation: CAA18213.2
AL161577 Genomic DNA Translation: CAB79798.1
CP002687 Genomic DNA Translation: AEE85810.1
AY046037 mRNA Translation: AAK76711.1
AY091204 mRNA Translation: AAM14143.1
PIRiE85360
RefSeqiNP_194809.1, NM_119226.4
UniGeneiAt.2164

Genome annotation databases

EnsemblPlantsiAT4G30800.1; AT4G30800.1; AT4G30800
GeneIDi829203
GrameneiAT4G30800.1; AT4G30800.1; AT4G30800
KEGGiath:AT4G30800

Similar proteinsi

Entry informationi

Entry nameiRS112_ARATH
AccessioniPrimary (citable) accession number: O65569
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 2000
Last modified: April 25, 2018
This is version 131 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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