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Protein

40S ribosomal protein S11-2

Gene

RPS11B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S11-2
Gene namesi
Name:RPS11B
Ordered Locus Names:At4g30800
ORF Names:F6I18.290
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G30800.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 15915940S ribosomal protein S11-2PRO_0000128516Add
BLAST

Proteomic databases

PaxDbiO65569.
PRIDEiO65569.

PTM databases

iPTMnetiO65569.

Expressioni

Gene expression databases

GenevisibleiO65569. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G30800.1.

Structurei

3D structure databases

ProteinModelPortaliO65569.
SMRiO65569. Positions 4-146.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S17P family.Curated

Phylogenomic databases

eggNOGiKOG1728. Eukaryota.
COG0186. LUCA.
HOGENOMiHOG000231341.
InParanoidiO65569.
KOiK02949.
OMAiVIIRREY.
OrthoDBiEOG09360QR2.
PhylomeDBiO65569.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_01345_B. Ribosomal_S17_B. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR032440. Ribosomal_S11_N.
IPR000266. Ribosomal_S17/S11.
IPR028333. Ribosomal_S17_arc-typ.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiPF00366. Ribosomal_S17. 1 hit.
PF16205. Ribosomal_S17_N. 1 hit.
[Graphical view]
PRINTSiPR00973. RIBOSOMALS17.
ProDomiPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03630. uS17_arch. 1 hit.
PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O65569-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI
60 70 80 90 100
EGTYIDQKCP FTGTVSIRGR ILSGTCHSAK MQRTIIVRRD YLHFVKKYRR
110 120 130 140 150
YEKRHSNIPA HVSPCFRVKE GDRVTIGQCR PLSKTVRFNV LKVIPAGSSS

IGKKAFTGM
Length:159
Mass (Da):17,931
Last modified:May 1, 2000 - v2
Checksum:iAA00D4FC99632B73
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022198 Genomic DNA. Translation: CAA18213.2.
AL161577 Genomic DNA. Translation: CAB79798.1.
CP002687 Genomic DNA. Translation: AEE85810.1.
AY046037 mRNA. Translation: AAK76711.1.
AY091204 mRNA. Translation: AAM14143.1.
PIRiE85360.
RefSeqiNP_194809.1. NM_119226.3.
UniGeneiAt.2164.

Genome annotation databases

EnsemblPlantsiAT4G30800.1; AT4G30800.1; AT4G30800.
GeneIDi829203.
GrameneiAT4G30800.1; AT4G30800.1; AT4G30800.
KEGGiath:AT4G30800.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022198 Genomic DNA. Translation: CAA18213.2.
AL161577 Genomic DNA. Translation: CAB79798.1.
CP002687 Genomic DNA. Translation: AEE85810.1.
AY046037 mRNA. Translation: AAK76711.1.
AY091204 mRNA. Translation: AAM14143.1.
PIRiE85360.
RefSeqiNP_194809.1. NM_119226.3.
UniGeneiAt.2164.

3D structure databases

ProteinModelPortaliO65569.
SMRiO65569. Positions 4-146.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G30800.1.

PTM databases

iPTMnetiO65569.

Proteomic databases

PaxDbiO65569.
PRIDEiO65569.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G30800.1; AT4G30800.1; AT4G30800.
GeneIDi829203.
GrameneiAT4G30800.1; AT4G30800.1; AT4G30800.
KEGGiath:AT4G30800.

Organism-specific databases

TAIRiAT4G30800.

Phylogenomic databases

eggNOGiKOG1728. Eukaryota.
COG0186. LUCA.
HOGENOMiHOG000231341.
InParanoidiO65569.
KOiK02949.
OMAiVIIRREY.
OrthoDBiEOG09360QR2.
PhylomeDBiO65569.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiO65569.

Gene expression databases

GenevisibleiO65569. AT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_01345_B. Ribosomal_S17_B. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR032440. Ribosomal_S11_N.
IPR000266. Ribosomal_S17/S11.
IPR028333. Ribosomal_S17_arc-typ.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiPF00366. Ribosomal_S17. 1 hit.
PF16205. Ribosomal_S17_N. 1 hit.
[Graphical view]
PRINTSiPR00973. RIBOSOMALS17.
ProDomiPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03630. uS17_arch. 1 hit.
PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS112_ARATH
AccessioniPrimary (citable) accession number: O65569
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: May 1, 2000
Last modified: September 7, 2016
This is version 121 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.