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Protein
Submitted name:

Putative TIR-NBS-LRR class disease resistance protein

Gene

F23E13.30

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative TIR-NBS-LRR class disease resistance proteinImported
Submitted name:
Putative disease resistance proteinImported
Gene namesi
Name:F23E13.30Imported
Ordered Locus Names:At4g36140Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G36140.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei7 – 2721HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G36140.1.

Structurei

3D structure databases

SMRiO65506. Positions 49-254, 291-318, 438-577, 935-1139, 1163-1245.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini48 – 175128TIRInterPro annotationAdd
BLAST

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG0167. Eukaryota.
ENOG410XRTN. LUCA.
HOGENOMiHOG000115011.
OMAiREECSES.
PhylomeDBiO65506.

Family and domain databases

Gene3Di3.40.50.10140. 1 hit.
3.40.50.300. 2 hits.
3.80.10.10. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR032675. L_dom-like.
IPR011713. Leu-rich_rpt_3.
IPR002182. NB-ARC.
IPR027417. P-loop_NTPase.
IPR000157. TIR_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF07725. LRR_3. 1 hit.
PF00931. NB-ARC. 2 hits.
PF01582. TIR. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
SM00255. TIR. 2 hits.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF52058. SSF52058. 1 hit.
SSF52200. SSF52200. 2 hits.
SSF52540. SSF52540. 2 hits.
PROSITEiPS50104. TIR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O65506-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDYSSASLLR ICAAAITILG TVSFLIYEKF IRSNPQKKKK ITASSRNWEH
60 70 80 90 100
NVFSSFSSVD VPKSFLSRIR KELRRKGFEP LIDNETERCV SIGPELRNAI
110 120 130 140 150
SVSRIVIVVL SRNYALSPWC LDELVEIMKC KEELGQRVVT IFYNLDPIDV
160 170 180 190 200
LKQTGDFGDN FRKTRKGKTD EDIWKCTRAL AELPRVYKLT SRLSIKIDDT
210 220 230 240 250
AMNKHREECE RKNKEDIDRW IKALEQVATI DGYRSRDWDD EKAMVKKIAN
260 270 280 290 300
DISSIMNNST QSSASQGLVG MEAHMEKMKE LLGLDSNKVR LIGICGLPGS
310 320 330 340 350
GKTTIAKRLY QQLLPQFELS TIIIDIKGCY PRTCYNEDDR KLQLQSHLLS
360 370 380 390 400
QLLNHKFTGE ILQLEAAHEM LKDKKVVLVL DDVDSIGQLD ALANEARWFG
410 420 430 440 450
PGSRIIITTQ DQRLLEEQGI QYIYNVDFPP PNGLLPTVYI YCEDTLQYSF
460 470 480 490 500
ASHLSMDFRR KGISAFVNYS ETLDVIERVS ASVLVFSKSC VSSTSCLDML
510 520 530 540 550
VRVFQCRRKT GQLVVPVYYG ISSSDVVVQE HKSVDRIREW SSALQELREL
560 570 580 590 600
PGHHNREECS ESELVEEIVK DVHEKLFPTE QIGINSRLLE MEHLLCKQPW
610 620 630 640 650
GVRRIGIWGM PGIGKTTLAK AFFDQISGGY EASCFIKHFD KAFSGKGLHR
660 670 680 690 700
LLEEHFGKIL KELPRVCSSI TRPSLPRDKL SKKRTLVVLD DVHNPLVAES
710 720 730 740 750
FLEGFHWFGP GSLIIITSRD KQVFRLCQIN HVYEVQSFNE NEALQLFSQC
760 770 780 790 800
AFRRDINEQN LLELSLKVID YASGNPLALS FYCRVLKGKE LSEMETTFFK
810 820 830 840 850
LKQRTPYKIF DLFKSSYETL DDNEKNIFLD IACFFSGENV DYVMRLLEGC
860 870 880 890 900
GFFPHVGIDV LVENCLVTIS ENRVKMHRII QDFGREIIDG ETVQIERRRR
910 920 930 940 950
LSDPWSIKFL LEDDELEANE DPKATYTRTL GTEDIEGILL DTSNLTFDVK
960 970 980 990 1000
PGAFENMLSL RFLKIYCSSY ENHYSLRLPK GLKFLPDELR LLHWENYPLQ
1010 1020 1030 1040 1050
SLPQDFDPCH LVELNLSYSQ LQKLWAGTKS LEMLKVVKLC HSQQLTAIDD
1060 1070 1080 1090 1100
ILKAQNIELI DLQGCRKLQR FPATGQLQHL RVVNLSGCRE IKSFPEVSPN
1110 1120 1130 1140 1150
IEELHLQGTG IRELPISIVS LFEQAKLNRE LFNLLPEFSG VSNAWNNEQS
1160 1170 1180 1190 1200
TSLAKLVTST QNLGKLVCLN MKDCVHLRKL PYMVDFESLK VLNLSGCSDL
1210 1220 1230 1240 1250
DDIEGFPPNL KELYLVSTAL KELPQLPQSL EVLNAHGCVS LLSIPSNFER
1260 1270 1280 1290 1300
LPRYYTFSNC FALSASVVNE FVKNALTNVA HIAREKQELN KSLALNFTVP
1310 1320 1330 1340 1350
SPESKNITFD LQPGSSVIIQ LGSSWRLIRG FAILVEVAFL EEYQAGAFSI
1360 1370 1380 1390 1400
SCVCRWKDTE CVSHRLEKNF HCWIPGEGVP KDHMFVFCDF DMHLTACEGN
1410 1420 1430 1440 1450
DSSILADLVV FEFFTVNKQK KLLDGSCAVT RCGVHVFTAA NEDTSSSMTK
1460 1470 1480 1490 1500
PFSSSGYLQE IFDNEVEELR VIYDGLDEND RNLLLYMAYL NGEEADFLAP
1510 1520 1530 1540 1550
LIASTGLGIS SRLNVLANKS LINISPYGII VRQGLLKKIG REIVYRSVYL
1560 1570 1580 1590 1600
SSLNDTLPGS STVSLRLAAV KEPKVTTFKV PRVRSVKQDE FNAKINAFIS

RFKQKPQ
Length:1,607
Mass (Da):182,787
Last modified:August 1, 1998 - v1
Checksum:i4F8F572EC72074F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002687 Genomic DNA. Translation: AEE86624.1.
AL022141 Genomic DNA. Translation: CAA18120.1.
AL161588 Genomic DNA. Translation: CAB81523.1.
PIRiT04583.
RefSeqiNP_195337.1. NM_119781.1.
UniGeneiAt.31348.

Genome annotation databases

EnsemblPlantsiAT4G36140.1; AT4G36140.1; AT4G36140.
GeneIDi829771.
GrameneiAT4G36140.1; AT4G36140.1; AT4G36140.
KEGGiath:AT4G36140.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002687 Genomic DNA. Translation: AEE86624.1.
AL022141 Genomic DNA. Translation: CAA18120.1.
AL161588 Genomic DNA. Translation: CAB81523.1.
PIRiT04583.
RefSeqiNP_195337.1. NM_119781.1.
UniGeneiAt.31348.

3D structure databases

SMRiO65506. Positions 49-254, 291-318, 438-577, 935-1139, 1163-1245.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G36140.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G36140.1; AT4G36140.1; AT4G36140.
GeneIDi829771.
GrameneiAT4G36140.1; AT4G36140.1; AT4G36140.
KEGGiath:AT4G36140.

Organism-specific databases

TAIRiAT4G36140.

Phylogenomic databases

eggNOGiKOG0167. Eukaryota.
ENOG410XRTN. LUCA.
HOGENOMiHOG000115011.
OMAiREECSES.
PhylomeDBiO65506.

Family and domain databases

Gene3Di3.40.50.10140. 1 hit.
3.40.50.300. 2 hits.
3.80.10.10. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR032675. L_dom-like.
IPR011713. Leu-rich_rpt_3.
IPR002182. NB-ARC.
IPR027417. P-loop_NTPase.
IPR000157. TIR_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF07725. LRR_3. 1 hit.
PF00931. NB-ARC. 2 hits.
PF01582. TIR. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
SM00255. TIR. 2 hits.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF52058. SSF52058. 1 hit.
SSF52200. SSF52200. 2 hits.
SSF52540. SSF52540. 2 hits.
PROSITEiPS50104. TIR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE.
  2. EU Arabidopsis sequencing project
    Submitted (MAR-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    EU, CSHL and WU Arabidopsis Sequencing Project
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  4. Wedler H., Wambutt R., Mewes H.W., Lemcke K., Mayer K.F.X.
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE OF 1-188.
  5. Hilbert H., Braun M., Holzer E., Brandt A., Duesterhoeft A., Mewes H.W., Lemcke K., Mayer K.F.X.
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. EU Arabidopsis sequencing project
    Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  7. TAIR10
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  8. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiO65506_ARATH
AccessioniPrimary (citable) accession number: O65506
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: June 8, 2016
This is version 137 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.