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Protein

Zinc finger protein ZAT3

Gene

ZAT3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Mediates the regulation of male germ cell division by DUO1.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri77 – 9923C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri162 – 18423C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri222 – 24423C2H2-type 3PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • pollen sperm cell differentiation Source: TAIR
  • regulation of transcription, DNA-templated Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein ZAT3Curated
Alternative name(s):
Protein DUO1-ACTIVATED ZINC FINGER 21 Publication
Gene namesi
Name:ZAT3Curated
Synonyms:DAZ21 Publication
Ordered Locus Names:At4g35280Imported
ORF Names:F23E12.160Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G35280.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 284284Zinc finger protein ZAT3PRO_0000409712Add
BLAST

Proteomic databases

PaxDbiO65499.

Expressioni

Tissue specificityi

Expressed exclusively in pollen.1 Publication

Developmental stagei

Expressed in the germ cells following microspore division, increases during development and persists into mature pollen.1 Publication

Inductioni

Activated by the transcritpion factor DUO1.1 Publication

Gene expression databases

GenevisibleiO65499. AT.

Interactioni

Subunit structurei

Interacts (via the EAR motif) with TPL.1 Publication

Protein-protein interaction databases

BioGridi14963. 1 interaction.
STRINGi3702.AT4G35280.1.

Structurei

3D structure databases

ProteinModelPortaliO65499.
SMRiO65499. Positions 76-107, 151-192, 211-248.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 3 C2H2-type zinc fingers.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri77 – 9923C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri162 – 18423C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri222 – 24423C2H2-type 3PROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
HOGENOMiHOG000090842.
InParanoidiO65499.
OMAiMSEEDHE.
PhylomeDBiO65499.

Family and domain databases

InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
PfamiPF13912. zf-C2H2_6. 3 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 3 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 3 hits.
PS50157. ZINC_FINGER_C2H2_2. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O65499-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNNNHSYDDR SFHIPLHPSN TSNPNPNLQF ALSSSYDHSP KKKRTKTVAS
60 70 80 90 100
SSSSSPKSAS KPKYTKKPDP NAPKITRPCT ECGRKFWSWK ALFGHMRCHP
110 120 130 140 150
ERQWRGINPP PNYRVPTAAS SKQLNQILPN WVSFMSEEDH EVASCLLMLS
160 170 180 190 200
NGTPSSSSIE RFECGGCKKV FGSHQALGGH RASHKNVKGC FAITNVTDDP
210 220 230 240 250
MTVSTSSGHD HQGKILTFSG HHKCNICFRV FSSGQALGGH MRCHWEKEEE
260 270 280
PMISGALDLN VPPTIQDLST SDTSGCCLDL RLGL
Length:284
Mass (Da):31,362
Last modified:August 1, 1998 - v1
Checksum:i9E9DAAA4DC7EE89A
GO

Sequence cautioni

The sequence ABK28666.1 differs from that shown. Reason: Erroneous termination at position 285. Translated as stop.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022604 Genomic DNA. Translation: CAA18741.1.
AL161587 Genomic DNA. Translation: CAB80245.1.
CP002687 Genomic DNA. Translation: AEE86489.1.
DQ446896 mRNA. Translation: ABE66112.1.
DQ653246 mRNA. Translation: ABK28666.1. Sequence problems.
AB493719 mRNA. Translation: BAH30557.1.
PIRiT06129.
RefSeqiNP_195254.1. NM_119694.1.
UniGeneiAt.64211.
At.77.

Genome annotation databases

EnsemblPlantsiAT4G35280.1; AT4G35280.1; AT4G35280.
GeneIDi829681.
GrameneiAT4G35280.1; AT4G35280.1; AT4G35280.
KEGGiath:AT4G35280.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022604 Genomic DNA. Translation: CAA18741.1.
AL161587 Genomic DNA. Translation: CAB80245.1.
CP002687 Genomic DNA. Translation: AEE86489.1.
DQ446896 mRNA. Translation: ABE66112.1.
DQ653246 mRNA. Translation: ABK28666.1. Sequence problems.
AB493719 mRNA. Translation: BAH30557.1.
PIRiT06129.
RefSeqiNP_195254.1. NM_119694.1.
UniGeneiAt.64211.
At.77.

3D structure databases

ProteinModelPortaliO65499.
SMRiO65499. Positions 76-107, 151-192, 211-248.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi14963. 1 interaction.
STRINGi3702.AT4G35280.1.

Proteomic databases

PaxDbiO65499.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G35280.1; AT4G35280.1; AT4G35280.
GeneIDi829681.
GrameneiAT4G35280.1; AT4G35280.1; AT4G35280.
KEGGiath:AT4G35280.

Organism-specific databases

TAIRiAT4G35280.

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
HOGENOMiHOG000090842.
InParanoidiO65499.
OMAiMSEEDHE.
PhylomeDBiO65499.

Miscellaneous databases

PROiO65499.

Gene expression databases

GenevisibleiO65499. AT.

Family and domain databases

InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
PfamiPF13912. zf-C2H2_6. 3 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 3 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 3 hits.
PS50157. ZINC_FINGER_C2H2_2. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana."
    Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V., Obermaier B.
    , Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B., Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W., Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A., Martienssen R., McCombie W.R.
    Nature 402:769-777(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations."
    Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.
    Plant Biotechnol. J. 4:317-324(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "ORF cloning and analysis of Arabidopsis transcription factor genes."
    Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y., Takagi M.
    Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  5. "The R2R3 MYB transcription factor DUO1 activates a male germline-specific regulon essential for sperm cell differentiation in Arabidopsis."
    Borg M., Brownfield L., Khatab H., Sidorova A., Lingaya M., Twell D.
    Plant Cell 23:534-549(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION.
  6. "An EAR-dependent regulatory module promotes male germ cell division and sperm fertility in Arabidopsis."
    Borg M., Rutley N., Kagale S., Hamamura Y., Gherghinoiu M., Kumar S., Sari U., Esparza-Franco M.A., Sakamoto W., Rozwadowski K., Higashiyama T., Twell D.
    Plant Cell 26:2098-2113(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, INTERACTION WITH TPL, SUBCELLULAR LOCATION, DEVELOPMENTAL STAGE, TISSUE SPECIFICITY.

Entry informationi

Entry nameiZAT3_ARATH
AccessioniPrimary (citable) accession number: O65499
Secondary accession number(s): A0MFC0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 28, 2011
Last sequence update: August 1, 1998
Last modified: June 8, 2016
This is version 117 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.