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Protein

NEDD8-like protein RUB3

Gene

RUB3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

May function as a stable post-translational protein modifier.By similarity

Keywordsi

Biological processUbl conjugation pathway

Enzyme and pathway databases

ReactomeiR-ATH-5689603 UCH proteinases
R-ATH-8951664 Neddylation

Names & Taxonomyi

Protein namesi
Recommended name:
NEDD8-like protein RUB3
Alternative name(s):
Ubiquitin-related protein 3
Short name:
AtRUB3
Gene namesi
Name:RUB3
Synonyms:UBQ16
Ordered Locus Names:At1g11980
ORF Names:F12F1.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G11980
TAIRilocus:2008950 AT1G11980

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000359691 – 76NEDD8-like protein RUB3Add BLAST76
PropeptideiPRO_000003597077 – 78Curated2

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Cross-linki76Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)PROSITE-ProRule annotation

Keywords - PTMi

Isopeptide bond

Proteomic databases

PaxDbiO65381

Expressioni

Tissue specificityi

Detected in stems and flower buds, but not in leaves, mature flowers and seedlings.1 Publication

Gene expression databases

ExpressionAtlasiO65381 baseline

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G11980.1

Structurei

3D structure databases

ProteinModelPortaliO65381
SMRiO65381
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiKOG0005 Eukaryota
COG5272 LUCA
HOGENOMiHOG000233942
InParanoidiO65381
KOiK12158
OMAiGKQMTDD
OrthoDBiEOG093713E9
PhylomeDBiO65381

Family and domain databases

InterProiView protein in InterPro
IPR019956 Ubiquitin
IPR029071 Ubiquitin-like_domsf
IPR019954 Ubiquitin_CS
IPR000626 Ubiquitin_dom
PfamiView protein in Pfam
PF00240 ubiquitin, 1 hit
PRINTSiPR00348 UBIQUITIN
SMARTiView protein in SMART
SM00213 UBQ, 1 hit
SUPFAMiSSF54236 SSF54236, 1 hit
PROSITEiView protein in PROSITE
PS00299 UBIQUITIN_1, 1 hit
PS50053 UBIQUITIN_2, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O65381-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIKVKTLTE KQIDIEIELT DTIERIKERI EEKEGIPPVH QRIVYTGKQL
60 70
ADDLTAKHYN LERGSVLHLV LALRGGCC
Length:78
Mass (Da):8,940
Last modified:August 1, 1998 - v1
Checksum:iE20603430CCAEAEC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002131 Genomic DNA Translation: AAC17623.1
CP002684 Genomic DNA Translation: AEE28823.1
PIRiG86254
RefSeqiNP_172662.1, NM_101070.1
UniGeneiAt.51581

Genome annotation databases

EnsemblPlantsiAT1G11980.1; AT1G11980.1; AT1G11980
GeneIDi837750
GrameneiAT1G11980.1; AT1G11980.1; AT1G11980
KEGGiath:AT1G11980

Similar proteinsi

Entry informationi

Entry nameiRUB3_ARATH
AccessioniPrimary (citable) accession number: O65381
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 31, 2003
Last sequence update: August 1, 1998
Last modified: April 25, 2018
This is version 105 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome