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Protein

NEDD8-like protein RUB3

Gene

RUB3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

May function as a stable post-translational protein modifier.By similarity

Keywords - Biological processi

Ubl conjugation pathway

Names & Taxonomyi

Protein namesi
Recommended name:
NEDD8-like protein RUB3
Alternative name(s):
Ubiquitin-related protein 3
Short name:
AtRUB3
Gene namesi
Name:RUB3
Synonyms:UBQ16
Ordered Locus Names:At1g11980
ORF Names:F12F1.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G11980.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7676NEDD8-like protein RUB3PRO_0000035969Add
BLAST
Propeptidei77 – 782CuratedPRO_0000035970

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Cross-linki76 – 76Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)PROSITE-ProRule annotation

Keywords - PTMi

Isopeptide bond

Proteomic databases

PaxDbiO65381.
PRIDEiO65381.

Expressioni

Tissue specificityi

Detected in stems and flower buds, but not in leaves, mature flowers and seedlings.1 Publication

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G11980.1.

Structurei

3D structure databases

ProteinModelPortaliO65381.
SMRiO65381. Positions 1-73.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiKOG0005. Eukaryota.
COG5272. LUCA.
HOGENOMiHOG000233942.
InParanoidiO65381.
KOiK12158.
OMAiGKQMTDD.
PhylomeDBiO65381.

Family and domain databases

InterProiIPR019956. Ubiquitin.
IPR029071. Ubiquitin-rel_dom.
IPR019954. Ubiquitin_CS.
IPR000626. Ubiquitin_dom.
[Graphical view]
PfamiPF00240. ubiquitin. 1 hit.
[Graphical view]
PRINTSiPR00348. UBIQUITIN.
SMARTiSM00213. UBQ. 1 hit.
[Graphical view]
SUPFAMiSSF54236. SSF54236. 1 hit.
PROSITEiPS00299. UBIQUITIN_1. 1 hit.
PS50053. UBIQUITIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O65381-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIKVKTLTE KQIDIEIELT DTIERIKERI EEKEGIPPVH QRIVYTGKQL
60 70
ADDLTAKHYN LERGSVLHLV LALRGGCC
Length:78
Mass (Da):8,940
Last modified:August 1, 1998 - v1
Checksum:iE20603430CCAEAEC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002131 Genomic DNA. Translation: AAC17623.1.
CP002684 Genomic DNA. Translation: AEE28823.1.
PIRiG86254.
RefSeqiNP_172662.1. NM_101070.1.
UniGeneiAt.51581.

Genome annotation databases

EnsemblPlantsiAT1G11980.1; AT1G11980.1; AT1G11980.
GeneIDi837750.
GrameneiAT1G11980.1; AT1G11980.1; AT1G11980.
KEGGiath:AT1G11980.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002131 Genomic DNA. Translation: AAC17623.1.
CP002684 Genomic DNA. Translation: AEE28823.1.
PIRiG86254.
RefSeqiNP_172662.1. NM_101070.1.
UniGeneiAt.51581.

3D structure databases

ProteinModelPortaliO65381.
SMRiO65381. Positions 1-73.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G11980.1.

Proteomic databases

PaxDbiO65381.
PRIDEiO65381.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G11980.1; AT1G11980.1; AT1G11980.
GeneIDi837750.
GrameneiAT1G11980.1; AT1G11980.1; AT1G11980.
KEGGiath:AT1G11980.

Organism-specific databases

TAIRiAT1G11980.

Phylogenomic databases

eggNOGiKOG0005. Eukaryota.
COG5272. LUCA.
HOGENOMiHOG000233942.
InParanoidiO65381.
KOiK12158.
OMAiGKQMTDD.
PhylomeDBiO65381.

Miscellaneous databases

PROiO65381.

Family and domain databases

InterProiIPR019956. Ubiquitin.
IPR029071. Ubiquitin-rel_dom.
IPR019954. Ubiquitin_CS.
IPR000626. Ubiquitin_dom.
[Graphical view]
PfamiPF00240. ubiquitin. 1 hit.
[Graphical view]
PRINTSiPR00348. UBIQUITIN.
SMARTiSM00213. UBQ. 1 hit.
[Graphical view]
SUPFAMiSSF54236. SSF54236. 1 hit.
PROSITEiPS00299. UBIQUITIN_1. 1 hit.
PS50053. UBIQUITIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRUB3_ARATH
AccessioniPrimary (citable) accession number: O65381
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2003
Last sequence update: August 1, 1998
Last modified: February 17, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.