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Protein

NEDD8-like protein RUB3

Gene

RUB3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

May function as a stable post-translational protein modifier.By similarity

Keywords - Biological processi

Ubl conjugation pathway

Names & Taxonomyi

Protein namesi
Recommended name:
NEDD8-like protein RUB3
Alternative name(s):
Ubiquitin-related protein 3
Short name:
AtRUB3
Gene namesi
Name:RUB3
Synonyms:UBQ16
Ordered Locus Names:At1g11980
ORF Names:F12F1.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G11980.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7676NEDD8-like protein RUB3PRO_0000035969Add
BLAST
Propeptidei77 – 782CuratedPRO_0000035970

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Cross-linki76 – 76Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)PROSITE-ProRule annotation

Keywords - PTMi

Isopeptide bond

Proteomic databases

PaxDbiO65381.
PRIDEiO65381.

Expressioni

Tissue specificityi

Detected in stems and flower buds, but not in leaves, mature flowers and seedlings.1 Publication

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G11980.1.

Structurei

3D structure databases

ProteinModelPortaliO65381.
SMRiO65381. Positions 1-73.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiKOG0005. Eukaryota.
COG5272. LUCA.
HOGENOMiHOG000233942.
InParanoidiO65381.
KOiK12158.
OMAiGKQMTDD.
PhylomeDBiO65381.

Family and domain databases

InterProiIPR019956. Ubiquitin.
IPR029071. Ubiquitin-rel_dom.
IPR019954. Ubiquitin_CS.
IPR000626. Ubiquitin_dom.
[Graphical view]
PfamiPF00240. ubiquitin. 1 hit.
[Graphical view]
PRINTSiPR00348. UBIQUITIN.
SMARTiSM00213. UBQ. 1 hit.
[Graphical view]
SUPFAMiSSF54236. SSF54236. 1 hit.
PROSITEiPS00299. UBIQUITIN_1. 1 hit.
PS50053. UBIQUITIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O65381-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIKVKTLTE KQIDIEIELT DTIERIKERI EEKEGIPPVH QRIVYTGKQL
60 70
ADDLTAKHYN LERGSVLHLV LALRGGCC
Length:78
Mass (Da):8,940
Last modified:August 1, 1998 - v1
Checksum:iE20603430CCAEAEC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002131 Genomic DNA. Translation: AAC17623.1.
CP002684 Genomic DNA. Translation: AEE28823.1.
PIRiG86254.
RefSeqiNP_172662.1. NM_101070.1.
UniGeneiAt.51581.

Genome annotation databases

EnsemblPlantsiAT1G11980.1; AT1G11980.1; AT1G11980.
GeneIDi837750.
GrameneiAT1G11980.1; AT1G11980.1; AT1G11980.
KEGGiath:AT1G11980.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002131 Genomic DNA. Translation: AAC17623.1.
CP002684 Genomic DNA. Translation: AEE28823.1.
PIRiG86254.
RefSeqiNP_172662.1. NM_101070.1.
UniGeneiAt.51581.

3D structure databases

ProteinModelPortaliO65381.
SMRiO65381. Positions 1-73.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G11980.1.

Proteomic databases

PaxDbiO65381.
PRIDEiO65381.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G11980.1; AT1G11980.1; AT1G11980.
GeneIDi837750.
GrameneiAT1G11980.1; AT1G11980.1; AT1G11980.
KEGGiath:AT1G11980.

Organism-specific databases

TAIRiAT1G11980.

Phylogenomic databases

eggNOGiKOG0005. Eukaryota.
COG5272. LUCA.
HOGENOMiHOG000233942.
InParanoidiO65381.
KOiK12158.
OMAiGKQMTDD.
PhylomeDBiO65381.

Miscellaneous databases

PROiO65381.

Family and domain databases

InterProiIPR019956. Ubiquitin.
IPR029071. Ubiquitin-rel_dom.
IPR019954. Ubiquitin_CS.
IPR000626. Ubiquitin_dom.
[Graphical view]
PfamiPF00240. ubiquitin. 1 hit.
[Graphical view]
PRINTSiPR00348. UBIQUITIN.
SMARTiSM00213. UBQ. 1 hit.
[Graphical view]
SUPFAMiSSF54236. SSF54236. 1 hit.
PROSITEiPS00299. UBIQUITIN_1. 1 hit.
PS50053. UBIQUITIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "The rub family of ubiquitin-like proteins. Crystal structure of Arabidopsis rub1 and expression of multiple rubs in Arabidopsis."
    Rao-Naik C., delaCruz W., Laplaza J.M., Tan S., Callis J., Fisher A.J.
    J. Biol. Chem. 273:34976-34982(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY.

Entry informationi

Entry nameiRUB3_ARATH
AccessioniPrimary (citable) accession number: O65381
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2003
Last sequence update: August 1, 1998
Last modified: February 17, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.