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Protein

NEDD8-like protein RUB3

Gene

RUB3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

May function as a stable post-translational protein modifier.By similarity

Keywordsi

Biological processUbl conjugation pathway

Enzyme and pathway databases

ReactomeiR-ATH-5689603. UCH proteinases.
R-ATH-8951664. Neddylation.

Names & Taxonomyi

Protein namesi
Recommended name:
NEDD8-like protein RUB3
Alternative name(s):
Ubiquitin-related protein 3
Short name:
AtRUB3
Gene namesi
Name:RUB3
Synonyms:UBQ16
Ordered Locus Names:At1g11980
ORF Names:F12F1.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G11980.
TAIRilocus:2008950. AT1G11980.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000359691 – 76NEDD8-like protein RUB3Add BLAST76
PropeptideiPRO_000003597077 – 78Curated2

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Cross-linki76Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)PROSITE-ProRule annotation

Keywords - PTMi

Isopeptide bond

Proteomic databases

PaxDbiO65381.

Expressioni

Tissue specificityi

Detected in stems and flower buds, but not in leaves, mature flowers and seedlings.1 Publication

Gene expression databases

ExpressionAtlasiO65381. baseline.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G11980.1.

Structurei

3D structure databases

ProteinModelPortaliO65381.
SMRiO65381.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiKOG0005. Eukaryota.
COG5272. LUCA.
HOGENOMiHOG000233942.
InParanoidiO65381.
KOiK12158.
OMAiGKQMTDD.
OrthoDBiEOG093713E9.
PhylomeDBiO65381.

Family and domain databases

InterProiView protein in InterPro
IPR019956. Ubiquitin.
IPR029071. Ubiquitin-like_domsf.
IPR019954. Ubiquitin_CS.
IPR000626. Ubiquitin_dom.
PfamiView protein in Pfam
PF00240. ubiquitin. 1 hit.
PRINTSiPR00348. UBIQUITIN.
SMARTiView protein in SMART
SM00213. UBQ. 1 hit.
SUPFAMiSSF54236. SSF54236. 1 hit.
PROSITEiView protein in PROSITE
PS00299. UBIQUITIN_1. 1 hit.
PS50053. UBIQUITIN_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O65381-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIKVKTLTE KQIDIEIELT DTIERIKERI EEKEGIPPVH QRIVYTGKQL
60 70
ADDLTAKHYN LERGSVLHLV LALRGGCC
Length:78
Mass (Da):8,940
Last modified:August 1, 1998 - v1
Checksum:iE20603430CCAEAEC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002131 Genomic DNA. Translation: AAC17623.1.
CP002684 Genomic DNA. Translation: AEE28823.1.
PIRiG86254.
RefSeqiNP_172662.1. NM_101070.1.
UniGeneiAt.51581.

Genome annotation databases

EnsemblPlantsiAT1G11980.1; AT1G11980.1; AT1G11980.
GeneIDi837750.
GrameneiAT1G11980.1; AT1G11980.1; AT1G11980.
KEGGiath:AT1G11980.

Similar proteinsi

Entry informationi

Entry nameiRUB3_ARATH
AccessioniPrimary (citable) accession number: O65381
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 31, 2003
Last sequence update: August 1, 1998
Last modified: December 20, 2017
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names