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Protein

Probable germin-like protein subfamily 2 member 5

Gene

At5g26700

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi106 – 1061ManganeseBy similarity
Metal bindingi108 – 1081ManganeseBy similarity
Metal bindingi113 – 1131ManganeseBy similarity
Metal bindingi152 – 1521ManganeseBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable germin-like protein subfamily 2 member 5
Gene namesi
Ordered Locus Names:At5g26700
ORF Names:F21E10.2
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G26700.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 213191Probable germin-like protein subfamily 2 member 5PRO_0000010825Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi29 ↔ 44By similarity
Glycosylationi67 – 671N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiO65252.
PRIDEiO65252.

Expressioni

Gene expression databases

ExpressionAtlasiO65252. baseline and differential.
GenevisibleiO65252. AT.

Interactioni

Subunit structurei

Oligomer (believed to be a pentamer but probably hexamer).By similarity

Structurei

3D structure databases

ProteinModelPortaliO65252.
SMRiO65252. Positions 25-210.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the germin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410J8F7. Eukaryota.
ENOG410Y41R. LUCA.
InParanoidiO65252.
OMAiCKDSTQI.
OrthoDBiEOG09360LVG.
PhylomeDBiO65252.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR006045. Cupin_1.
IPR001929. Germin.
IPR019780. Germin_Mn-BS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSiPR00325. GERMIN.
SMARTiSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00725. GERMIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O65252-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASFATHLVV VVTMLFVAMA SAEMLQDVCV ADLSNAVKVN GYTCKDSTQI
60 70 80 90 100
TPEDFYFKGL ANIAATNTST GSVVTGANVE KLPGLNTLGL SMSRIDYAPN
110 120 130 140 150
GLNPPHVHPR ASEIIFVLEG QLYVGFVTTA GKLIAKNLNK GDVFTFPKGL
160 170 180 190 200
IHFQKNIANS PASVLAAFDS QLPGTQSLVA SLFGALPDDI LAKSFQLKHK
210
QVKKIKLRYA PKK
Length:213
Mass (Da):22,812
Last modified:August 29, 2001 - v2
Checksum:i87A690E437705EC1
GO

Sequence cautioni

The sequence AAC13591 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF058914 Genomic DNA. Translation: AAC13591.1. Sequence problems.
CP002688 Genomic DNA. Translation: AED93574.1.
BT005231 mRNA. Translation: AAO63295.1.
PIRiT01199.
RefSeqiNP_850875.1. NM_180544.2.
UniGeneiAt.49067.
At.71213.

Genome annotation databases

EnsemblPlantsiAT5G26700.1; AT5G26700.1; AT5G26700.
GeneIDi832719.
GrameneiAT5G26700.1; AT5G26700.1; AT5G26700.
KEGGiath:AT5G26700.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF058914 Genomic DNA. Translation: AAC13591.1. Sequence problems.
CP002688 Genomic DNA. Translation: AED93574.1.
BT005231 mRNA. Translation: AAO63295.1.
PIRiT01199.
RefSeqiNP_850875.1. NM_180544.2.
UniGeneiAt.49067.
At.71213.

3D structure databases

ProteinModelPortaliO65252.
SMRiO65252. Positions 25-210.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiO65252.
PRIDEiO65252.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G26700.1; AT5G26700.1; AT5G26700.
GeneIDi832719.
GrameneiAT5G26700.1; AT5G26700.1; AT5G26700.
KEGGiath:AT5G26700.

Organism-specific databases

TAIRiAT5G26700.

Phylogenomic databases

eggNOGiENOG410J8F7. Eukaryota.
ENOG410Y41R. LUCA.
InParanoidiO65252.
OMAiCKDSTQI.
OrthoDBiEOG09360LVG.
PhylomeDBiO65252.

Miscellaneous databases

PROiO65252.

Gene expression databases

ExpressionAtlasiO65252. baseline and differential.
GenevisibleiO65252. AT.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
InterProiIPR006045. Cupin_1.
IPR001929. Germin.
IPR019780. Germin_Mn-BS.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 1 hit.
[Graphical view]
PRINTSiPR00325. GERMIN.
SMARTiSM00835. Cupin_1. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
PROSITEiPS00725. GERMIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiGL25_ARATH
AccessioniPrimary (citable) accession number: O65252
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 29, 2001
Last sequence update: August 29, 2001
Last modified: September 7, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.