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Protein
Submitted name:

F7N22.6 protein

Gene

F7N22.6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
F7N22.6 proteinImported
Submitted name:
Similarity to retroelement pol polyproteinImported
Gene namesi
Name:F7N22.6Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Structurei

3D structure databases

ProteinModelPortaliO65223.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini503 – 57977Integrase catalyticInterPro annotationAdd
BLAST

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR025724. GAG-pre-integrase_dom.
IPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF13976. gag_pre-integrs. 1 hit.
PF00665. rve. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O65223-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDINTNSKI VGNTTVVETP DEVALHLAKE LEKTQITDSG MDNVRRNLFA
60 70 80 90 100
NDSTNTTIPS SASQGMMPDF INMERYLTED PPIVPQGTTY VYTVGGMDTW
110 120 130 140 150
AQGDYCCKGL ILNRLVNDLF DLYNKAKSSK TLWLTLENKY KTDESGMQRF
160 170 180 190 200
STAKFLNFKM VDSKPIMEQV EALQRISQEI ELEGMSICNV FKTNCLIEKL
210 220 230 240 250
PPGWLDFKNY LNFKRKAMTF DDLVRRLMIE GNNYGAHAGA QNQGHDVNVA
260 270 280 290 300
EHKAKLKGKG KGFSIPQKNL KVSSTTNFKK SNPERKFKGK CHHCGKIGHK
310 320 330 340 350
GDVCKSKAKD VKSQANLTEE DMVAVVTECN MVDDNQVEWY YDTGCTTHIC
360 370 380 390 400
TDRTMFSTYV KNKSNEQLFM GNTAMSMIEG GLVKMSVMTV FPKNVASASV
410 420 430 440 450
VEMNENPITY LVESFTTWHE RLGHVNYKIM RKMQNMNLIP KFKTNQEKCE
460 470 480 490 500
VCVHAKLTKT PSPRVERTTE PMNLIPKFKT NQEKCELCVQ AKLTKTPSPR
510 520 530 540 550
VERTTEPLGL IYTDLCDLKY VQTRGGKKFF VTFIDDCTRY YYVYLLHSKD
560 570
EALVKFKEFT LEVENQLQRT IKIVRSDRG
Length:579
Mass (Da):66,041
Last modified:August 1, 1998 - v1
Checksum:i958BF6A58DE86013
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF058825 Genomic DNA. Translation: AAC13580.1.
AB024037 Genomic DNA. Translation: BAA97405.1.
PIRiT01160.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF058825 Genomic DNA. Translation: AAC13580.1.
AB024037 Genomic DNA. Translation: BAA97405.1.
PIRiT01160.

3D structure databases

ProteinModelPortaliO65223.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR025724. GAG-pre-integrase_dom.
IPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF13976. gag_pre-integrs. 1 hit.
PF00665. rve. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The A. thaliana Genome Sequencing Project."
    WashU
    Submitted (APR-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "The sequence of A. thaliana F7N22."
    Dante M.
    Submitted (APR-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Waterston R.
    Submitted (APR-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S.
    DNA Res. 7:31-63(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiO65223_ARATH
AccessioniPrimary (citable) accession number: O65223
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: June 8, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.