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Protein

Superoxide dismutase [Cu-Zn], chloroplastic

Gene

SODCP

Organism
Vitis vinifera (Grape)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.

Cofactori

Protein has several cofactor binding sites:
  • Cu cationBy similarityNote: Binds 1 copper ion per subunit.By similarity
  • Zn2+By similarityNote: Binds 1 zinc ion per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi104 – 1041Copper; catalyticBy similarity
Metal bindingi106 – 1061Copper; catalyticBy similarity
Metal bindingi121 – 1211Copper; catalyticBy similarity
Metal bindingi121 – 1211Zinc; structuralBy similarity
Metal bindingi129 – 1291Zinc; structuralBy similarity
Metal bindingi138 – 1381Zinc; structuralBy similarity
Metal bindingi141 – 1411Zinc; structuralBy similarity
Metal bindingi178 – 1781Copper; catalyticBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Antioxidant, Oxidoreductase

Keywords - Ligandi

Copper, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn], chloroplastic (EC:1.15.1.1)
Gene namesi
Name:SODCP
OrganismiVitis vinifera (Grape)
Taxonomic identifieri29760 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 5858ChloroplastSequence analysisAdd
BLAST
Chaini59 – 212154Superoxide dismutase [Cu-Zn], chloroplasticPRO_0000032853Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi115 ↔ 204By similarity

Keywords - PTMi

Disulfide bond

Proteomic databases

PRIDEiO65199.

Interactioni

Subunit structurei

Homotetramer.By similarity

Protein-protein interaction databases

STRINGi29760.VIT_06s0061g00750.t01.

Structurei

3D structure databases

ProteinModelPortaliO65199.
SMRiO65199. Positions 60-212.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG0441. Eukaryota.
COG2032. LUCA.
HOGENOMiHOG000263447.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR031074. CSD2_chloroplastic.
IPR024134. SOD_Cu/Zn_/chaperone.
IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PANTHERiPTHR10003. PTHR10003. 1 hit.
PTHR10003:SF34. PTHR10003:SF34. 1 hit.
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
PRINTSiPR00068. CUZNDISMTASE.
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O65199-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVNTLLSTA PSRVFLSFPN PSPNPSPQLH SQFHGLSLKL TRQSIPLATA
60 70 80 90 100
PKPLSVVAVT KKAVAVLKGT SSVEGVVTLS QEDDGPTTVS VRITGLTPGN
110 120 130 140 150
HGFHLHEFGD TTNGCMSTGA HFNPNGMTHG APEDDVRHAG DLGNIIANAE
160 170 180 190 200
GVAEATIVDT QIPLSGPNAV IGRALVVHEL EDDLGKGGHE LSLTTGNAGG
210
RLACGVVGLT PI
Length:212
Mass (Da):21,725
Last modified:August 1, 1998 - v1
Checksum:iA1D9140E4C56915E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF056622 mRNA. Translation: AAC14128.1.
UniGeneiVvi.114.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF056622 mRNA. Translation: AAC14128.1.
UniGeneiVvi.114.

3D structure databases

ProteinModelPortaliO65199.
SMRiO65199. Positions 60-212.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi29760.VIT_06s0061g00750.t01.

Proteomic databases

PRIDEiO65199.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG0441. Eukaryota.
COG2032. LUCA.
HOGENOMiHOG000263447.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR031074. CSD2_chloroplastic.
IPR024134. SOD_Cu/Zn_/chaperone.
IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PANTHERiPTHR10003. PTHR10003. 1 hit.
PTHR10003:SF34. PTHR10003:SF34. 1 hit.
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
PRINTSiPR00068. CUZNDISMTASE.
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Deng M., McKersie B.D.
    Submitted (MAR-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Pinot noir.
    Tissue: Leaf.

Entry informationi

Entry nameiSODCP_VITVI
AccessioniPrimary (citable) accession number: O65199
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: August 1, 1998
Last modified: November 11, 2015
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.