O64795 (O64795_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA polymerase RuleBase RU000442
EC=2.7.7.7 RuleBase RU000442

Gene names

Name:

T1F15.3 EMBL AAC18785.1

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	1894 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Catalytic activity	Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). RuleBase RU000442
Sequence similarities	Belongs to the DNA polymerase type-B family. RuleBase RU000442

Ontologies

Keywords
Biological process	DNA replication RuleBase RU000442
Ligand	DNA-binding RuleBase RU000442
Molecular function	DNA-directed DNA polymerase RuleBase RU000442 Nucleotidyltransferase Transferase
Gene Ontology (GO)
Biological_process	DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW DNA-directed DNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW nucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O64795 [UniParc]. Last modified August 1, 1998. Version 1. Checksum: AE36498D70EFCBF8	FASTA	1,894	211,358
	10 20 30 40 50 60 MADSQSGSNV FSLRIVSIDY YMASPIPGYN ICYSSFQGSE VNEVPVIRIY GSTPAGQKTC 70 80 90 100 110 120 LHIHRALPYL YIPCSEIPLE HHKGVDGSTL ALSLELEKAL KLKGNAASKR QHIHDCEIVR 130 140 150 160 170 180 AKKFYGYHST EEAFVKIYLY PYSSYHPPDV ARAASLLLAG AVLGKSLQPY ESHIPFILQF 190 200 210 220 230 240 LVDYNLYGMG HVHISKMKFR SPVPHHFRPR RFDLDDCPGQ RIDEVAITKA NSSAAASVSF 250 260 270 280 290 300 PVWSLSTIPG QWMWNLSEES DTPLSQSQHR HQHHYRRQSL CELEGDATSS DILNQQFKMY 310 320 330 340 350 360 NSLSQAQSDT NMVQSLVAIW EEEYERTGVH DAPIPPDPGK PSAADVLQTM SDYVGFGNML 370 380 390 400 410 420 KEMLNKVELS PPGMKPTAVS SAGPDMHAKP EITDLQALNH MVGTCSEFPA SEQLSPLGEK 430 440 450 460 470 480 SEEASMENDE YMKTPTDRDT PAQIQDAEAL GLFKWFASSQ AAEDINSDDE ILRETILSPL 490 500 510 520 530 540 LPLASINKVL EMASTDYVSQ SQKECQDILD SQENLPDFGS STKRALPSNP DSQNLRTSSD 550 560 570 580 590 600 KQSLEIEVAS DVPDSSTSNG ASENSFRRYR KSDLHTSEVM EYKNRSFSKS NKPSNSVWGP 610 620 630 640 650 660 LPFTLTKNLQ KDFDSTNASD KLGLTKISSY PMNEMTDNYI VPVKEHQADV CNTIDRNVLA 670 680 690 700 710 720 GCSLRDLMRK KRLCHGESPV SQHMKSRKVR DSRHGEKNEC TLRCEAKKQG PALSAEFSEF 730 740 750 760 770 780 VCGDTPNLSP IDSGNCECNI STESSELHSV DRCSAKETAS QNSDEVLRNL SSTTVPFGKD 790 800 810 820 830 840 PQTVESGTLV SSNIHVGIEI DSVQKSGREQ ESTANETDET GRLICLTLSK KPPSLDCLSA 850 860 870 880 890 900 GLQDSAHSHE IHAREKQHDE YEGNSNDIPF FPLEDNKEEK KHFFQGTSLG IPLHHLNDGS 910 920 930 940 950 960 NLYLLTPAFS PPSVDSVLQW ISNDKGDSNI DSEKQPLRDN HNDRGASFTD LASASNVVSV 970 980 990 1000 1010 1020 SEHVEQHNNL FVNSESNAYT ESEIDLKPKG TFLNLNLQAS VSQELSQISG PDGKSGPTPL 1030 1040 1050 1060 1070 1080 SQMGFRDPAS MGAGQQLTIL SIEVHAESRG DLRPDPRFDS VNVIALVVQN DDSFVAEVFV 1090 1100 1110 1120 1130 1140 LLFSPDSIDQ RNVDGLSGCK LSVFLEERQL FRYFIETLCK WDPDVLLGWD IQGGSIGFLA 1150 1160 1170 1180 1190 1200 ERAAQLGIRF LNNISRTPSP TTTNNSDNKR KLGNNLLPDP LVANPAQVEE VVIEDEWGRT 1210 1220 1230 1240 1250 1260 HASGVHVGGR IVLNAWRLIR GEVKLNMYTI EAVSEAVLRQ KVPSIPYKVL TEWFSSGPAG 1270 1280 1290 1300 1310 1320 ARYRCIEYVI RRANLNLEIM SQLDMINRTS ELARVFGIDF FSVLSRGSQY RVESMLLRLA 1330 1340 1350 1360 1370 1380 HTQNYLAISP GNQQVASQPA MECVPLVMEP ESAFYDDPVI VLDFQSLYPS MIIAYNLCFS 1390 1400 1410 1420 1430 1440 TCLGKLAHLK MNTLGVSSYS LDLDVLQDLN QILQTPNSVM YVPPEVRRGI LPRLLEEILS 1450 1460 1470 1480 1490 1500 TRIMVKKAMK KLTPSEAVLH RIFNARQLAL KLIANVTYGY TAAGFSGRMP CAELADSIVQ 1510 1520 1530 1540 1550 1560 CGRSTLEKAI SFVNANDNWN ARVVYGDTDS MFVLLKGRTV KEAFVVGQEI ASAITEMNPH 1570 1580 1590 1600 1610 1620 PVTLKMEKVY HPCFLLTKKR YVGYSYESPN QREPIFDAKG IETVRRDTCE AVAKTMEQSL 1630 1640 1650 1660 1670 1680 RLFFEQKNIS KVKSYLYRQW KRILSGRVSL QDFIFAKEVR LGTYSTRDSS LLPPAAIVAT 1690 1700 1710 1720 1730 1740 KSMKADPRTE PRYAERVPYV VIHGEPGARL VDMVVDPLVL LDVDTPYRLN DLYYINKQII 1750 1760 1770 1780 1790 1800 PALQRVFGLV GADLNQWFLE MPRLTRSSLG QRPLNSKNSH KTRIDYFYLS KHCILCGEVV 1810 1820 1830 1840 1850 1860 QESAQLCNRC LQNKSAAAAT IVWKTSKLER EMQHLATICR HCGGGDWVVQ SGVKCNSLAC 1870 1880 1890 SVFYERRKVQ KELRGLSSIA TESELYPKCM AEWF

References

[1]

"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC004393 Genomic DNA. Translation: AAC18785.1.
IPI	IPI00991639.
PIR	T02155.
3D structure databases
ProteinModelPortal	O64795.
ModBase	Search...
Proteomic databases
PaxDb	O64795.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Phylogenomic databases
eggNOG	COG0417.
HOGENOM	HOG000084343.
Gene expression databases
ArrayExpress	O64795.
Genevestigator	O64795.
Family and domain databases
Gene3D	3.90.1600.10. 2 hits.
InterPro	IPR006172. DNA-dir_DNA_pol_B. IPR017964. DNA-dir_DNA_pol_B_CS. IPR006133. DNA-dir_DNA_pol_B_exonuc. IPR006134. DNA-dir_DNA_pol_B_multi_dom. IPR023211. DNA_pol_palm_dom. IPR012337. RNaseH-like_dom. IPR025687. Znf-C4pol. [Graphical view]
Pfam	PF00136. DNA_pol_B. 1 hit. PF03104. DNA_pol_B_exo1. 2 hits. PF14260. zf-C4pol. 1 hit. [Graphical view]
PRINTS	PR00106. DNAPOLB.
SMART	SM00486. POLBc. 1 hit. [Graphical view]
SUPFAM	SSF53098. RNaseH_fold. 1 hit.
PROSITE	PS00116. DNA_POLYMERASE_B. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

O64795_ARATH

Accession

Primary (citable) accession number: O64795

Entry history

Integrated into UniProtKB/TrEMBL:	August 1, 1998
Last sequence update:	August 1, 1998
Last modified:	May 29, 2013
This is version 84 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)