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Protein

Agamous-like MADS-box protein AGL29

Gene

AGL29

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probable transcription factor.

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL29Curated
Gene namesi
Name:AGL291 Publication
Ordered Locus Names:At2g34440Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G34440.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 172172Agamous-like MADS-box protein AGL29PRO_0000433965Add
BLAST

Proteomic databases

PaxDbiO64703.
PRIDEiO64703.

Expressioni

Tissue specificityi

Expressed in pollen.1 Publication

Developmental stagei

During embryogenesis, expressed in the chalazal endosperm.1 Publication

Gene expression databases

GenevisibleiO64703. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G34440.1.

Structurei

3D structure databases

ProteinModelPortaliO64703.
SMRiO64703. Positions 2-62.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 6161MADS-boxPROSITE-ProRule annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili86 – 12338Sequence analysisAdd
BLAST

Sequence similaritiesi

Contains 1 MADS-box domain.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
InParanoidiO64703.
OMAiCNAELGI.
PhylomeDBiO64703.

Family and domain databases

InterProiIPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS50066. MADS_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O64703-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP
60 70 80 90 100
GGKPFSYGKP NLDSVAERFM REYDDSDSGD EEKSGNYRPK LKRLSERLDL
110 120 130 140 150
LNQEVEAEKE RGEKSQEKLE SAGDERFKES IETLTLDELN EYKDRLQTVH
160 170
GRIEGQVNHL QASSCLMLLS RK
Length:172
Mass (Da):19,753
Last modified:August 1, 1998 - v1
Checksum:i3244A1A986F5C5EF
GO

Sequence cautioni

The sequence ABK28522.1 differs from that shown. Reason: Erroneous termination at position 173. Translated as stop.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti42 – 421E → K in ABK28522 (PubMed:17147637).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004077 Genomic DNA. Translation: AAC26702.1.
AC004481 Genomic DNA. Translation: AAM14943.1.
CP002685 Genomic DNA. Translation: AEC08974.1.
DQ446598 mRNA. Translation: ABE65885.1.
DQ653040 mRNA. Translation: ABK28522.1. Sequence problems.
AB094117 mRNA. Translation: BAC99092.1.
PIRiT02331.
RefSeqiNP_180991.1. NM_128996.2.
UniGeneiAt.37804.

Genome annotation databases

EnsemblPlantsiAT2G34440.1; AT2G34440.1; AT2G34440.
GeneIDi818007.
GrameneiAT2G34440.1; AT2G34440.1; AT2G34440.
KEGGiath:AT2G34440.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004077 Genomic DNA. Translation: AAC26702.1.
AC004481 Genomic DNA. Translation: AAM14943.1.
CP002685 Genomic DNA. Translation: AEC08974.1.
DQ446598 mRNA. Translation: ABE65885.1.
DQ653040 mRNA. Translation: ABK28522.1. Sequence problems.
AB094117 mRNA. Translation: BAC99092.1.
PIRiT02331.
RefSeqiNP_180991.1. NM_128996.2.
UniGeneiAt.37804.

3D structure databases

ProteinModelPortaliO64703.
SMRiO64703. Positions 2-62.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G34440.1.

Proteomic databases

PaxDbiO64703.
PRIDEiO64703.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G34440.1; AT2G34440.1; AT2G34440.
GeneIDi818007.
GrameneiAT2G34440.1; AT2G34440.1; AT2G34440.
KEGGiath:AT2G34440.

Organism-specific databases

TAIRiAT2G34440.

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
InParanoidiO64703.
OMAiCNAELGI.
PhylomeDBiO64703.

Gene expression databases

GenevisibleiO64703. AT.

Family and domain databases

InterProiIPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations."
    Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.
    Plant Biotechnol. J. 4:317-324(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses."
    Kofuji R., Sumikawa N., Yamasaki M., Kondo K., Ueda K., Ito M., Hasebe M.
    Mol. Biol. Evol. 20:1963-1977(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 32-172, TISSUE SPECIFICITY.
    Strain: cv. Columbia.
  5. "Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world."
    Parenicova L., de Folter S., Kieffer M., Horner D.S., Favalli C., Busscher J., Cook H.E., Ingram R.M., Kater M.M., Davies B., Angenent G.C., Colombo L.
    Plant Cell 15:1538-1551(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.
  6. "An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis."
    Bemer M., Heijmans K., Airoldi C., Davies B., Angenent G.C.
    Plant Physiol. 154:287-300(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: DEVELOPMENTAL STAGE.

Entry informationi

Entry nameiAGL29_ARATH
AccessioniPrimary (citable) accession number: O64703
Secondary accession number(s): A0MER8, Q76K79
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 14, 2015
Last sequence update: August 1, 1998
Last modified: February 17, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.