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Protein

Agamous-like MADS-box protein AGL29

Gene

AGL29

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probable transcription factor.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL29Curated
Gene namesi
Name:AGL291 Publication
Ordered Locus Names:At2g34440Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G34440.
TAIRilocus:2040819. AT2G34440.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004339651 – 172Agamous-like MADS-box protein AGL29Add BLAST172

Proteomic databases

PaxDbiO64703.

Expressioni

Tissue specificityi

Expressed in pollen.1 Publication

Developmental stagei

During embryogenesis, expressed in the chalazal endosperm.1 Publication

Gene expression databases

ExpressionAtlasiO64703. baseline and differential.
GenevisibleiO64703. AT.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

IntActiO64703. 4 interactors.
STRINGi3702.AT2G34440.1.

Structurei

3D structure databases

ProteinModelPortaliO64703.
SMRiO64703.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 61MADS-boxPROSITE-ProRule annotationAdd BLAST61

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili86 – 123Sequence analysisAdd BLAST38

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
InParanoidiO64703.
OMAiCNAELGI.
OrthoDBiEOG09360QRV.
PhylomeDBiO64703.

Family and domain databases

Gene3Di3.40.1810.10. 1 hit.
InterProiView protein in InterPro
IPR002100. TF_MADSbox.
PfamiView protein in Pfam
PF00319. SRF-TF. 1 hit.
PRINTSiPR00404. MADSDOMAIN.
SMARTiView protein in SMART
SM00432. MADS. 1 hit.
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiView protein in PROSITE
PS50066. MADS_BOX_2. 1 hit.

Sequencei

Sequence statusi: Complete.

O64703-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP
60 70 80 90 100
GGKPFSYGKP NLDSVAERFM REYDDSDSGD EEKSGNYRPK LKRLSERLDL
110 120 130 140 150
LNQEVEAEKE RGEKSQEKLE SAGDERFKES IETLTLDELN EYKDRLQTVH
160 170
GRIEGQVNHL QASSCLMLLS RK
Length:172
Mass (Da):19,753
Last modified:August 1, 1998 - v1
Checksum:i3244A1A986F5C5EF
GO

Sequence cautioni

The sequence ABK28522 differs from that shown. Reason: Erroneous termination at position 173. Translated as stop.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti42E → K in ABK28522 (PubMed:17147637).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004077 Genomic DNA. Translation: AAC26702.1.
AC004481 Genomic DNA. Translation: AAM14943.1.
CP002685 Genomic DNA. Translation: AEC08974.1.
DQ446598 mRNA. Translation: ABE65885.1.
DQ653040 mRNA. Translation: ABK28522.1. Sequence problems.
AB094117 mRNA. Translation: BAC99092.1.
PIRiT02331.
RefSeqiNP_180991.1. NM_128996.3.
UniGeneiAt.37804.

Genome annotation databases

EnsemblPlantsiAT2G34440.1; AT2G34440.1; AT2G34440.
GeneIDi818007.
GrameneiAT2G34440.1; AT2G34440.1; AT2G34440.
KEGGiath:AT2G34440.

Similar proteinsi

Entry informationi

Entry nameiAGL29_ARATH
AccessioniPrimary (citable) accession number: O64703
Secondary accession number(s): A0MER8, Q76K79
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 14, 2015
Last sequence update: August 1, 1998
Last modified: September 27, 2017
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names