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Protein

40S ribosomal protein S27-1

Gene

RPS27A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Cofactori

Zn2+CuratedNote: Binds 1 zinc ion per subunit.Curated

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri39 – 61C4-typeSequence analysisAdd BLAST23

GO - Molecular functioni

  • metal ion binding Source: UniProtKB-KW
  • mRNA binding Source: TAIR
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S27-1
Gene namesi
Name:RPS27A
Synonyms:ARS27C
Ordered Locus Names:At2g45710
ORF Names:F17K2.35, F4I18.31
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G45710
TAIRilocus:2050756 AT2G45710

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001490591 – 8440S ribosomal protein S27-1Add BLAST84

Proteomic databases

PaxDbiO64650
PRIDEiO64650

PTM databases

iPTMnetiO64650

Expressioni

Gene expression databases

ExpressionAtlasiO64650 baseline and differential
GenevisibleiO64650 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G45710.1

Structurei

3D structure databases

ProteinModelPortaliO64650
SMRiO64650
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri39 – 61C4-typeSequence analysisAdd BLAST23

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1779 Eukaryota
COG2051 LUCA
HOGENOMiHOG000224977
InParanoidiO64650
KOiK02978
OMAiVKEKDMM
OrthoDBiEOG09360XZR
PhylomeDBiO64650

Family and domain databases

HAMAPiMF_00371 Ribosomal_S27e, 1 hit
InterProiView protein in InterPro
IPR000592 Ribosomal_S27e
IPR011332 Ribosomal_zn-bd
PANTHERiPTHR11594 PTHR11594, 1 hit
PfamiView protein in Pfam
PF01667 Ribosomal_S27e, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD004466 Ribosomal_S27e, 1 hit
SUPFAMiSSF57829 SSF57829, 1 hit
PROSITEiView protein in PROSITE
PS01168 RIBOSOMAL_S27E, 1 hit

Sequencei

Sequence statusi: Complete.

O64650-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLQNDIDLL NPPAELEKRK HKLKRLVQSP NSFFMDVKCQ GCFNITTVFS
60 70 80
HSQTVVMCGN CQTLLCTPTG GKAKLTEGCS FRKK
Length:84
Mass (Da):9,405
Last modified:August 1, 1998 - v1
Checksum:iC7AACBFCC60885BA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC003680 Genomic DNA Translation: AAM14895.1
AC004665 Genomic DNA Translation: AAC28554.1
CP002685 Genomic DNA Translation: AEC10590.1
AY072376 mRNA Translation: AAL62368.1
BT000089 mRNA Translation: AAN15408.1
AY085824 mRNA Translation: AAM63040.1
PIRiT00884 T02476
RefSeqiNP_182095.1, NM_130134.4
UniGeneiAt.36603

Genome annotation databases

EnsemblPlantsiAT2G45710.1; AT2G45710.1; AT2G45710
GeneIDi819179
GrameneiAT2G45710.1; AT2G45710.1; AT2G45710
KEGGiath:AT2G45710

Similar proteinsi

Entry informationi

Entry nameiRS271_ARATH
AccessioniPrimary (citable) accession number: O64650
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: August 1, 1998
Last modified: April 25, 2018
This is version 121 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health