Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

40S ribosomal protein S27-1

Gene

RPS27A

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Cofactori

Zn2+CuratedNote: Binds 1 zinc ion per subunit.Curated

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri39 – 61C4-typeSequence analysisAdd BLAST23

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S27-1
Gene namesi
Name:RPS27A
Synonyms:ARS27C
Ordered Locus Names:At2g45710
ORF Names:F17K2.35, F4I18.31
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G45710.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
  • cytosolic ribosome Source: TAIR
  • cytosolic small ribosomal subunit Source: TAIR
  • nucleolus Source: TAIR
  • plasma membrane Source: TAIR
  • plasmodesma Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001490591 – 8440S ribosomal protein S27-1Add BLAST84

Proteomic databases

PaxDbiO64650.
PRIDEiO64650.

PTM databases

iPTMnetiO64650.

Expressioni

Gene expression databases

ExpressionAtlasiO64650. baseline and differential.
GenevisibleiO64650. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G45710.1.

Structurei

3D structure databases

ProteinModelPortaliO64650.
SMRiO64650.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S27e family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri39 – 61C4-typeSequence analysisAdd BLAST23

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1779. Eukaryota.
COG2051. LUCA.
HOGENOMiHOG000224977.
InParanoidiO64650.
KOiK02978.
OMAiEGCSFRV.
OrthoDBiEOG09360XZR.
PhylomeDBiO64650.

Family and domain databases

Gene3Di2.20.25.100. 1 hit.
HAMAPiMF_00371. Ribosomal_S27e. 1 hit.
InterProiIPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR11594. PTHR11594. 1 hit.
PfamiPF01667. Ribosomal_S27e. 1 hit.
[Graphical view]
ProDomiPD004466. Ribosomal_S27e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01168. RIBOSOMAL_S27E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O64650-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLQNDIDLL NPPAELEKRK HKLKRLVQSP NSFFMDVKCQ GCFNITTVFS
60 70 80
HSQTVVMCGN CQTLLCTPTG GKAKLTEGCS FRKK
Length:84
Mass (Da):9,405
Last modified:August 1, 1998 - v1
Checksum:iC7AACBFCC60885BA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC003680 Genomic DNA. Translation: AAM14895.1.
AC004665 Genomic DNA. Translation: AAC28554.1.
CP002685 Genomic DNA. Translation: AEC10590.1.
AY072376 mRNA. Translation: AAL62368.1.
BT000089 mRNA. Translation: AAN15408.1.
AY085824 mRNA. Translation: AAM63040.1.
PIRiT00884. T02476.
RefSeqiNP_182095.1. NM_130134.4.
UniGeneiAt.36603.

Genome annotation databases

EnsemblPlantsiAT2G45710.1; AT2G45710.1; AT2G45710.
GeneIDi819179.
GrameneiAT2G45710.1; AT2G45710.1; AT2G45710.
KEGGiath:AT2G45710.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC003680 Genomic DNA. Translation: AAM14895.1.
AC004665 Genomic DNA. Translation: AAC28554.1.
CP002685 Genomic DNA. Translation: AEC10590.1.
AY072376 mRNA. Translation: AAL62368.1.
BT000089 mRNA. Translation: AAN15408.1.
AY085824 mRNA. Translation: AAM63040.1.
PIRiT00884. T02476.
RefSeqiNP_182095.1. NM_130134.4.
UniGeneiAt.36603.

3D structure databases

ProteinModelPortaliO64650.
SMRiO64650.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G45710.1.

PTM databases

iPTMnetiO64650.

Proteomic databases

PaxDbiO64650.
PRIDEiO64650.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G45710.1; AT2G45710.1; AT2G45710.
GeneIDi819179.
GrameneiAT2G45710.1; AT2G45710.1; AT2G45710.
KEGGiath:AT2G45710.

Organism-specific databases

TAIRiAT2G45710.

Phylogenomic databases

eggNOGiKOG1779. Eukaryota.
COG2051. LUCA.
HOGENOMiHOG000224977.
InParanoidiO64650.
KOiK02978.
OMAiEGCSFRV.
OrthoDBiEOG09360XZR.
PhylomeDBiO64650.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiO64650.

Gene expression databases

ExpressionAtlasiO64650. baseline and differential.
GenevisibleiO64650. AT.

Family and domain databases

Gene3Di2.20.25.100. 1 hit.
HAMAPiMF_00371. Ribosomal_S27e. 1 hit.
InterProiIPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR11594. PTHR11594. 1 hit.
PfamiPF01667. Ribosomal_S27e. 1 hit.
[Graphical view]
ProDomiPD004466. Ribosomal_S27e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01168. RIBOSOMAL_S27E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS271_ARATH
AccessioniPrimary (citable) accession number: O64650
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: August 1, 1998
Last modified: November 30, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.