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Protein
Submitted name:

F20D22.9 protein

Gene

F20D22.9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
F20D22.9 proteinImported
Gene namesi
Name:F20D22.9Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei808 – 83427HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiO64493.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G04140.2.

Structurei

3D structure databases

ProteinModelPortaliO64493.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini102 – 18685WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Keywords - Domaini

RepeatUniRule annotationSAAS annotation, Transmembrane, Transmembrane helixSequence analysis, WD repeatSAAS annotation

Phylogenomic databases

eggNOGiENOG410IQ11. Eukaryota.
ENOG410ZUDQ. LUCA.
HOGENOMiHOG000030084.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiIPR011047. Quinoprotein_ADH-like_supfam.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 1 hit.
[Graphical view]
SMARTiSM00320. WD40. 4 hits.
[Graphical view]
SUPFAMiSSF50998. SSF50998. 2 hits.
PROSITEiPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 1 hit.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O64493-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTESIWLNDQ SSPRSMIPSA KPVANVHRQR CRSVFKLLVQ REISPNTKFV
60 70 80 90 100
PRKRWGESRC DADSSCGTTS EPVREQGLNL ISWYLSVEAE SLQHLSAKYC
110 120 130 140 150
PLVPPPRSTI AAAFSSDGRT LASTHGDHTV KIIDCETGKC LKILTGHRRT
160 170 180 190 200
PWVVRFHPRH SEIVASGSLD HEVRLWNAKT GECIRTHDFY RPIASIAFHA
210 220 230 240 250
GGELLAVASG HKLHIWHYNK GGDDSAPAIV LKTRRSLRAV HFHPHGVPLL
260 270 280 290 300
LTAEVTDIDS SDSAMTRSTS PGYLRYPPPA IFFTNTQSGS RTSLAAELPL
310 320 330 340 350
VPLPYLLLPS YSADDPRILY SSGTTGPRNA QTRFQSNQSS VEHGSRTISP
360 370 380 390 400
SPLPMATSAD LSGSYHVPDN SASNTFATQA GARNSTTAVD AMDVDEAQPV
410 420 430 440 450
GRNRVPSQVS SQPDLLEFGQ LQQLFHFRDR GSWELPFLQG WLMAQSQAGA
460 470 480 490 500
NSVALPTGSS GHVNSTPYMG SSSASHSSTA SLEAGVASLE IPGGVNLYGV
510 520 530 540 550
SARGDSRDRI LQSRFAGSGL AEGRSSRNTQ HEGADAQPVV NRIPSELASS
560 570 580 590 600
IAAAELPCTV KLRVWSHDIK DPCSILKSDK CRLTIHHAVL CSEMGAHFSP
610 620 630 640 650
CGRYLAACVA CVIPHAETDP SLQTLVQQDS GLATSPTRHP VTAHQVMYEL
660 670 680 690 700
RVYSLEKESF GSVLVSRAIR AAHCLTSIQF SPTSEHILLA YGRRHGSLLK
710 720 730 740 750
SIVSDGETTS HFFTVLEIYR VSDMELVRVL PSSEDEVNVA CFHPSPGGGL
760 770 780 790 800
VYGTKEGKLR IFRYNTAAAS NLTAPNSSPD ENLAEGRIWV STILYTHSHR
810 820 830
QILHCGTIYL PLFLFGLFFP FCLLAVLLVV LPAVRFQT
Length:838
Mass (Da):91,245
Last modified:August 1, 1998 - v1
Checksum:i8941E3A877E13FA9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002411 Genomic DNA. Translation: AAC16752.1.
PIRiT00959.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002411 Genomic DNA. Translation: AAC16752.1.
PIRiT00959.

3D structure databases

ProteinModelPortaliO64493.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G04140.2.

Proteomic databases

PaxDbiO64493.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG410IQ11. Eukaryota.
ENOG410ZUDQ. LUCA.
HOGENOMiHOG000030084.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiIPR011047. Quinoprotein_ADH-like_supfam.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 1 hit.
[Graphical view]
SMARTiSM00320. WD40. 4 hits.
[Graphical view]
SUPFAMiSSF50998. SSF50998. 2 hits.
PROSITEiPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 1 hit.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Arabidopsis thaliana chromosome 1 BAC F20D22 complete sequence."
    Vysotskaia V.S., Osborne B.I., Schwartz J.R., Toriumi M., Kwan A., Yu G., Oji, O, Liu S., Li J., Hoang L., Araujo R., Au M., Brendel V., Buehler E., Conway A.B., Conway A.R., Dewar K.
    , Feng J., Kim C., Kurtz D., Li Y., Palm C.J., Shinn P., Sun H., Davis R.W., Ecker J.R., Federspiel N.A., Theologis A.
    Submitted (OCT-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Theologis
    Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO64493_ARATH
AccessioniPrimary (citable) accession number: O64493
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: June 8, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.