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Protein
Submitted name:

F20D22.6 protein

Gene

F20D22.6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Initiation factorImported

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

GTP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciARA:GQT-81-MONOMER.
ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-382556. ABC-family proteins mediated transport.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72731. Recycling of eIF2:GDP.

Names & Taxonomyi

Protein namesi
Submitted name:
F20D22.6 proteinImported
Submitted name:
Protein synthesis initiation factor eIF2 gammaImported
Submitted name:
Strong similarity to initiation factor eIF-2, gb|U37354 from SImported
Submitted name:
Translation initiation factor eIF-2 gamma subunitImported
Gene namesi
Name:F20D22.6Imported
Synonyms:EIF2 GAMMAImported
Ordered Locus Names:At1g04170Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G04170.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
Complete GO annotation...

Interactioni

Protein-protein interaction databases

IntActiO64490. 9 interactions.
STRINGi3702.AT1G04170.1.

Structurei

3D structure databases

SMRiO64490. Positions 31-459.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini31 – 240210Tr-type G (guanine nucleotide-binding)InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0466. Eukaryota.
COG5257. LUCA.
HOGENOMiHOG000229292.
KOiK03242.
OMAiRFPCERA.
PhylomeDBiO64490.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR027417. P-loop_NTPase.
IPR000795. TF_GTP-bd_dom.
IPR015256. TIF2_gsu_C.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
[Graphical view]
PfamiPF09173. eIF2_C. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 2 hits.
PROSITEiPS51722. G_TR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O64490-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRNKGLAEQ DLKKLDVTVL HPLSPEVISR QATINIGTIG HVAHGKSTVV
60 70 80 90 100
KAISGVQTVR FKNELERNIT IKLGYANAKI YKCEDEKCPR PMCYKAYGSG
110 120 130 140 150
KEDTPNCDVP GFENSKMKLL RHVSFVDCPG HDILMATMLN GAAIMDGALL
160 170 180 190 200
LIAANETCPQ PQTSEHLAAV EIMQLKHIII LQNKIDLIQE NVAINQHEAI
210 220 230 240 250
QKFIMNTVAD AAPIVPVSAQ LKYNIDVVCE YIVKKIPIPE RNFVSPPNMI
260 270 280 290 300
VIRSFDVNKP GYEVDEIKGG VAGGSILRGV LRVNQLIEIR PGIVTKDERG
310 320 330 340 350
NSKCTPIYSR IISLYAEQNE LQFAVPGGLI GVGTTMDPTL TRADRLVGQV
360 370 380 390 400
LGEIGSLPDV FVELEVNFFL LRRLLGVRTK GSEKQGKVSK LTKGEILMLN
410 420 430 440 450
IGSMSTGAKV VGVKVDLAKL QLTAPVCTSK GEKVALSRRV EKHWRLIGWG
460
QIQAGTTIEV PPSPF
Length:465
Mass (Da):50,853
Last modified:August 1, 1998 - v1
Checksum:iE3A0F9F8F73A43C9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002411 Genomic DNA. Translation: AAC16745.1.
AF353097 mRNA. Translation: AAK29674.1.
AY092973 mRNA. Translation: AAM12972.1.
BT002095 mRNA. Translation: AAN72106.1.
CP002684 Genomic DNA. Translation: AEE27665.1.
PIRiT00956.
RefSeqiNP_171913.1. NM_100298.2.
UniGeneiAt.22542.
At.71591.

Genome annotation databases

EnsemblPlantsiAT1G04170.1; AT1G04170.1; AT1G04170.
GeneIDi839238.
GrameneiAT1G04170.1; AT1G04170.1; AT1G04170.
KEGGiath:AT1G04170.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002411 Genomic DNA. Translation: AAC16745.1.
AF353097 mRNA. Translation: AAK29674.1.
AY092973 mRNA. Translation: AAM12972.1.
BT002095 mRNA. Translation: AAN72106.1.
CP002684 Genomic DNA. Translation: AEE27665.1.
PIRiT00956.
RefSeqiNP_171913.1. NM_100298.2.
UniGeneiAt.22542.
At.71591.

3D structure databases

SMRiO64490. Positions 31-459.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO64490. 9 interactions.
STRINGi3702.AT1G04170.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G04170.1; AT1G04170.1; AT1G04170.
GeneIDi839238.
GrameneiAT1G04170.1; AT1G04170.1; AT1G04170.
KEGGiath:AT1G04170.

Organism-specific databases

TAIRiAT1G04170.

Phylogenomic databases

eggNOGiKOG0466. Eukaryota.
COG5257. LUCA.
HOGENOMiHOG000229292.
KOiK03242.
OMAiRFPCERA.
PhylomeDBiO64490.

Enzyme and pathway databases

BioCyciARA:GQT-81-MONOMER.
ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-382556. ABC-family proteins mediated transport.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72731. Recycling of eIF2:GDP.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR027417. P-loop_NTPase.
IPR000795. TF_GTP-bd_dom.
IPR015256. TIF2_gsu_C.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
[Graphical view]
PfamiPF09173. eIF2_C. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 2 hits.
PROSITEiPS51722. G_TR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Arabidopsis thaliana chromosome 1 BAC F20D22 complete sequence."
    Vysotskaia V.S., Osborne B.I., Schwartz J.R., Toriumi M., Kwan A., Yu G., Oji, O, Liu S., Li J., Hoang L., Araujo R., Au M., Brendel V., Buehler E., Conway A.B., Conway A.R., Dewar K.
    , Feng J., Kim C., Kurtz D., Li Y., Palm C.J., Shinn P., Sun H., Davis R.W., Ecker J.R., Federspiel N.A., Theologis A.
    Submitted (OCT-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Theologis
    Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  4. Browning K.S., Chen R.
    Submitted (FEB-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  5. Cited for: NUCLEOTIDE SEQUENCE.
  6. Cited for: NUCLEOTIDE SEQUENCE.
  7. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  8. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiO64490_ARATH
AccessioniPrimary (citable) accession number: O64490
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: April 13, 2016
This is version 138 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.