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Protein
Submitted name:

SigC

Gene

sigC

Organism
Cyanidium caldarium
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
SigCImported
Gene namesi
Name:sigCImported
OrganismiCyanidium caldariumImported
Taxonomic identifieri2771 [NCBI]
Taxonomic lineageiEukaryotaRhodophytaBangiophyceaeCyanidialesCyanidiaceaeCyanidium

Structurei

3D structure databases

ProteinModelPortaliO64420.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini200 – 21314RNA_pol_sigma70InterPro annotationAdd
BLAST

Family and domain databases

Gene3Di1.10.10.10. 3 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 2 hits.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O64420-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALTSLGPLP DSFSSFSSLA SAPRVPLFKD ELRPFIEDDA NDDNEEGGLV
60 70 80 90 100
AQEQETMKPR RRAKTSTTCA ATAYVREICR LDRLTDEEVA SLSLATQDYC
110 120 130 140 150
ALMKQREELC AKLGREPTDT EWSTTVGVSE EEVRNEIERG RRARARLVAS
160 170 180 190 200
NLRLVLAIAN RYKSRAVVRS AWKSRSKGGM DMPSHEKVRL QRQHNIFLGD
210 220 230 240 250
LIQEGALGLI RAAEKFDPSK GFKFSTYATW WIRQAIQRCV SEHSRTIRLP
260 270 280 290 300
NHVTESLRQI YRMRARLQHV LKRPPTDEEV AEACNMTLKR LKKITQHAWK
310 320 330 340 350
TQTLSLEGPP NNEAHSLYKS QQGEAPLSIG SIIEATEETP EEALERNCMR
360 370 380 390 400
EDVECVLRTL PFQEREILRL RYGISDDERP HSTEELSARF QLPVHTIRLI
410 420
ESRALRKLRH PSLAAMLREY VNIL
Length:424
Mass (Da):48,503
Last modified:August 1, 1998 - v1
Checksum:i656C686945CD7F17
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006799 Genomic DNA. Translation: BAA25788.1.
PIRiT14359.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB006799 Genomic DNA. Translation: BAA25788.1.
PIRiT14359.

3D structure databases

ProteinModelPortaliO64420.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.10.10. 3 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 2 hits.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Two types of differentially photo-regulated nuclear genes that encode sigma factors for chloroplast RNA polymerase in the red alga Cyanidium caldarium strain RK-1."
    Oikawa K., Tanaka K., Takahashi H.
    Gene 210:277-285(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: RK-1Imported.

Entry informationi

Entry nameiO64420_CYACA
AccessioniPrimary (citable) accession number: O64420
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: April 13, 2016
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.