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Protein
Submitted name:

Serum response factor

Gene
N/A
Organism
Geodia cydonium (Sponge)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Serum response factorImported
OrganismiGeodia cydonium (Sponge)Imported
Taxonomic identifieri6047 [NCBI]
Taxonomic lineageiEukaryotaMetazoaPoriferaDemospongiaeHeteroscleromorphaTetractinellidaAstrophorinaGeodiidaeGeodia

Subcellular locationi

  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliO62543.
SMRiO62543. Positions 56-142.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini60 – 12061MADS-boxInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 MADS-box domain.UniRule annotation

Family and domain databases

InterProiIPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O62543-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLGENRYTPN PTNPDPFAPS LSTFPDPKNH IDNDERSSVS DTRHCTRGDK
60 70 80 90 100
PLPAPGKKTR GRVKIQMEYI QNKLRRYTTF SKRKSGMMKK AYELSTLTGT
110 120 130 140 150
QVMLLVASET GHVYTFATPK LQPMITSEAG KALIQTCLHQ PDPAPMGQGP
160 170 180 190 200
HQGDFDVRMS STGYEETDLG YSGLTEEDSF KNGMDMHISN AAAIQPSWTR
210 220 230 240 250
APSSPFLTGS CRCRSPSLSL SLGHPSCPPS PGCTPSRPSL PPRRPRALTP
260 270 280 290 300
PLLLATPHHS SHPAHHGPTP PCRTRGAHPP RPCLLAGLSP CPRLAHCDGY
310 320 330 340 350
GGARITWSSP PRHGPVREEP QQIPHPQYIQ PTCATLAYDC VHCLKWQPTN
360 370 380
AKNLRTLSLP AAIYFHHPSR SYMCLFLSFH LSP
Length:383
Mass (Da):42,139
Last modified:August 1, 1998 - v1
Checksum:iEE0BCE4EC93D19DC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X96769 mRNA. Translation: CAA65544.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X96769 mRNA. Translation: CAA65544.1.

3D structure databases

ProteinModelPortaliO62543.
SMRiO62543. Positions 56-142.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR002100. TF_MADSbox.
[Graphical view]
PfamiPF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Mueller W.E.
    Submitted (MAR-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "High conversation of the serum response factor with Metazoa: cDNA from the sponge Geodia cydonium."
    Scheffer U., Krasko A., Pancer Z., Mueller W.E.G.
    Biol. J. Linn. Soc. Lond. 61:127-137(1997)
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiO62543_GEOCY
AccessioniPrimary (citable) accession number: O62543
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: May 11, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.