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Protein
Submitted name:

SORBin homolog

Gene

sorb-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

SignaLinkiO62482.

Names & Taxonomyi

Protein namesi
Submitted name:
SORBin homologImported
Gene namesi
Name:sorb-1Imported
ORF Names:CELE_Y45F10D.13Imported, Y45F10D.13Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiY45F10D.13c; CE39436; WBGene00012891; sorb-1.

PTM / Processingi

Proteomic databases

EPDiO62482.
PeptideAtlasiO62482.

Expressioni

Gene expression databases

BgeeiWBGene00012891.
ExpressionAtlasiO62482. baseline.

Interactioni

Binary interactionsi

Show more details

Protein-protein interaction databases

DIPiDIP-24971N.
IntActiO62482. 54 interactors.
MINTiMINT-117049.

Structurei

3D structure databases

ProteinModelPortaliO62482.
SMRiO62482.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini151 – 210SH3InterPro annotationAdd BLAST60
Domaini213 – 273SH3InterPro annotationAdd BLAST61
Domaini414 – 473SH3InterPro annotationAdd BLAST60

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili78 – 110Sequence analysisAdd BLAST33

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00760000119190.
OMAiRTILYLW.
PhylomeDBiO62482.

Family and domain databases

InterProiView protein in InterPro
IPR001452. SH3_domain.
PfamiView protein in Pfam
PF14604. SH3_9. 3 hits.
PRINTSiPR00452. SH3DOMAIN.
SMARTiView protein in SMART
SM00326. SH3. 3 hits.
SUPFAMiSSF50044. SSF50044. 3 hits.
PROSITEiView protein in PROSITE
PS50002. SH3. 3 hits.

Sequencei

Sequence statusi: Complete.

O62482-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCDLPKKDVE FKEIDAIYEN MKIKNSQRQR SQNSLDLIRI TNNLDETTKS
60 70 80 90 100
LNLYLQQIDA TWKRSKSQPI MKGPNDQYNN QERVKQSNEE ELLRLKAEKL
110 120 130 140 150
AEELRKEKER KHSFIPSSAP SLQNNMDRLN SLLYDFSSDI QEPAHRDYTP
160 170 180 190 200
QPVMTATAVY KFEPRSAREL PLNRGDIIRI IREVDGYWME GERNGRSGIF
210 220 230 240 250
PTSYVQINTG NQGDSQKMRA IYPFTARSDT ELSLKRGEII TRRRQIDSNW
260 270 280 290 300
LEGSNQIGIV GIFPASYVEP IEQVEQHIPT IVPNRPKTPK IEDQVYNQVY
310 320 330 340 350
KPNETVIMQS NQGYYDKAAV VPNNKVRFDL PSGSDSNLQM SLNPHQNQFP
360 370 380 390 400
PTHTQTSTQQ PSNYGMKKIE YEREKVVEEV PPMHMDQYRK LNDEPKNPKK
410 420 430 440 450
DTNILMNAAS LIPKGSEMYR AVYPYQPQKE DELQLYTNDI IFVVEKCDDG
460 470
WFIGTSLRTG DFGIFPGNYV KRH
Length:473
Mass (Da):54,867
Last modified:December 20, 2005 - v2
Checksum:iD20A611556410173
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA16388.2.
PIRiT26940.
RefSeqiNP_001255756.1. NM_001268827.1.
UniGeneiCel.24633.

Genome annotation databases

EnsemblMetazoaiY45F10D.13c; Y45F10D.13c; WBGene00012891.
GeneIDi3565590.
UCSCiY45F10D.13b. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA16388.2.
PIRiT26940.
RefSeqiNP_001255756.1. NM_001268827.1.
UniGeneiCel.24633.

3D structure databases

ProteinModelPortaliO62482.
SMRiO62482.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-24971N.
IntActiO62482. 54 interactors.
MINTiMINT-117049.

Proteomic databases

EPDiO62482.
PeptideAtlasiO62482.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiY45F10D.13c; Y45F10D.13c; WBGene00012891.
GeneIDi3565590.
UCSCiY45F10D.13b. c. elegans.

Organism-specific databases

CTDi3565590.
WormBaseiY45F10D.13c; CE39436; WBGene00012891; sorb-1.

Phylogenomic databases

GeneTreeiENSGT00760000119190.
OMAiRTILYLW.
PhylomeDBiO62482.

Enzyme and pathway databases

SignaLinkiO62482.

Gene expression databases

BgeeiWBGene00012891.
ExpressionAtlasiO62482. baseline.

Family and domain databases

InterProiView protein in InterPro
IPR001452. SH3_domain.
PfamiView protein in Pfam
PF14604. SH3_9. 3 hits.
PRINTSiPR00452. SH3DOMAIN.
SMARTiView protein in SMART
SM00326. SH3. 3 hits.
SUPFAMiSSF50044. SSF50044. 3 hits.
PROSITEiView protein in PROSITE
PS50002. SH3. 3 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiO62482_CAEEL
AccessioniPrimary (citable) accession number: O62482
Entry historyiIntegrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: December 20, 2005
Last modified: May 10, 2017
This is version 148 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.