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Protein
Submitted name:

SORBin homolog

Gene

sorb-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-CEL-445355. Smooth Muscle Contraction.
SignaLinkiO62482.

Names & Taxonomyi

Protein namesi
Submitted name:
SORBin homologImported
Gene namesi
Name:sorb-1Imported
ORF Names:CELE_Y45F10D.13Imported, Y45F10D.13Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiY45F10D.13c; CE39436; WBGene00012891; sorb-1.

PTM / Processingi

Proteomic databases

EPDiO62482.
PeptideAtlasiO62482.

Expressioni

Gene expression databases

BgeeiWBGene00012891.
ExpressionAtlasiO62482. differential.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
athp-1Q186053EBI-325337,EBI-331810
B0507.3B1Q2475EBI-325337,EBI-2316099
C06A5.8O014816EBI-325337,EBI-2316191
C06G1.5Q177445EBI-325337,EBI-2315966
C09G1.4Q178655EBI-325337,EBI-317562
ceh-17G5EC894EBI-325337,EBI-2316478
CELE_C06G3.6Q177466EBI-325337,EBI-313792
CELE_C17E4.10Q932315EBI-325337,EBI-326358
CELE_F32B4.4O622036EBI-325337,EBI-320780
CELE_F41B4.1Q966J65EBI-325337,EBI-327612
CELE_F52E10.4Q206703EBI-325337,EBI-2316655
cyk-1Q7JP756EBI-325337,EBI-2003118
ddl-2O181956EBI-325337,EBI-313368
eps-8G5ED3311EBI-325337,EBI-2315916
exc-6Q9TYU93EBI-325337,EBI-2317613
figl-1O162996EBI-325337,EBI-320880
grd-7Q3Y4073EBI-325337,EBI-2317687
K10H10.4O456815EBI-325337,EBI-2316236
klp-3P459623EBI-325337,EBI-311892
lin-10O175835EBI-325337,EBI-313389
M57.1Q9TYX910EBI-325337,EBI-2315745
mab-10Q220023EBI-325337,EBI-2316177
mig-10P344006EBI-325337,EBI-2315872
nhl-1Q036016EBI-325337,EBI-314158
pat-12Q95QA611EBI-325337,EBI-327642
sap-49Q0944212EBI-325337,EBI-2316106
sli-1Q190195EBI-325337,EBI-315356
snn-1Q8MXU33EBI-325337,EBI-2316201
ttx-1Q9U2Z04EBI-325337,EBI-330989
vab-3G5EDS18EBI-325337,EBI-319610
vab-3G5EE716EBI-325337,EBI-2002749
wsp-1Q1779510EBI-325337,EBI-2316131
wsp-1Q8MQE65EBI-325337,EBI-2316008
wve-1Q9XVK66EBI-325337,EBI-312105
Y50D4A.4Q95Y584EBI-325337,EBI-2316345
zfp-3O021744EBI-325337,EBI-2315779

Protein-protein interaction databases

DIPiDIP-24971N.
IntActiO62482. 54 interactors.
MINTiMINT-117049.

Structurei

3D structure databases

ProteinModelPortaliO62482.
SMRiO62482.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini151 – 210SH3InterPro annotationAdd BLAST60
Domaini213 – 273SH3InterPro annotationAdd BLAST61
Domaini414 – 473SH3InterPro annotationAdd BLAST60

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili78 – 110Sequence analysisAdd BLAST33

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00760000119190.
OMAiRTILYLW.
PhylomeDBiO62482.

Family and domain databases

InterProiIPR030507. Bem1/Scd2.
IPR001452. SH3_domain.
[Graphical view]
PANTHERiPTHR10663:SF182. PTHR10663:SF182. 4 hits.
PfamiPF14604. SH3_9. 3 hits.
[Graphical view]
PRINTSiPR00452. SH3DOMAIN.
SMARTiSM00326. SH3. 3 hits.
[Graphical view]
SUPFAMiSSF50044. SSF50044. 3 hits.
PROSITEiPS50002. SH3. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O62482-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCDLPKKDVE FKEIDAIYEN MKIKNSQRQR SQNSLDLIRI TNNLDETTKS
60 70 80 90 100
LNLYLQQIDA TWKRSKSQPI MKGPNDQYNN QERVKQSNEE ELLRLKAEKL
110 120 130 140 150
AEELRKEKER KHSFIPSSAP SLQNNMDRLN SLLYDFSSDI QEPAHRDYTP
160 170 180 190 200
QPVMTATAVY KFEPRSAREL PLNRGDIIRI IREVDGYWME GERNGRSGIF
210 220 230 240 250
PTSYVQINTG NQGDSQKMRA IYPFTARSDT ELSLKRGEII TRRRQIDSNW
260 270 280 290 300
LEGSNQIGIV GIFPASYVEP IEQVEQHIPT IVPNRPKTPK IEDQVYNQVY
310 320 330 340 350
KPNETVIMQS NQGYYDKAAV VPNNKVRFDL PSGSDSNLQM SLNPHQNQFP
360 370 380 390 400
PTHTQTSTQQ PSNYGMKKIE YEREKVVEEV PPMHMDQYRK LNDEPKNPKK
410 420 430 440 450
DTNILMNAAS LIPKGSEMYR AVYPYQPQKE DELQLYTNDI IFVVEKCDDG
460 470
WFIGTSLRTG DFGIFPGNYV KRH
Length:473
Mass (Da):54,867
Last modified:December 20, 2005 - v2
Checksum:iD20A611556410173
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA16388.2.
PIRiT26940.
RefSeqiNP_001255756.1. NM_001268827.1.
UniGeneiCel.24633.

Genome annotation databases

EnsemblMetazoaiY45F10D.13c; Y45F10D.13c; WBGene00012891.
GeneIDi3565590.
UCSCiY45F10D.13b. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA16388.2.
PIRiT26940.
RefSeqiNP_001255756.1. NM_001268827.1.
UniGeneiCel.24633.

3D structure databases

ProteinModelPortaliO62482.
SMRiO62482.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-24971N.
IntActiO62482. 54 interactors.
MINTiMINT-117049.

Proteomic databases

EPDiO62482.
PeptideAtlasiO62482.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiY45F10D.13c; Y45F10D.13c; WBGene00012891.
GeneIDi3565590.
UCSCiY45F10D.13b. c. elegans.

Organism-specific databases

CTDi3565590.
WormBaseiY45F10D.13c; CE39436; WBGene00012891; sorb-1.

Phylogenomic databases

GeneTreeiENSGT00760000119190.
OMAiRTILYLW.
PhylomeDBiO62482.

Enzyme and pathway databases

ReactomeiR-CEL-445355. Smooth Muscle Contraction.
SignaLinkiO62482.

Gene expression databases

BgeeiWBGene00012891.
ExpressionAtlasiO62482. differential.

Family and domain databases

InterProiIPR030507. Bem1/Scd2.
IPR001452. SH3_domain.
[Graphical view]
PANTHERiPTHR10663:SF182. PTHR10663:SF182. 4 hits.
PfamiPF14604. SH3_9. 3 hits.
[Graphical view]
PRINTSiPR00452. SH3DOMAIN.
SMARTiSM00326. SH3. 3 hits.
[Graphical view]
SUPFAMiSSF50044. SSF50044. 3 hits.
PROSITEiPS50002. SH3. 3 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO62482_CAEEL
AccessioniPrimary (citable) accession number: O62482
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: December 20, 2005
Last modified: November 30, 2016
This is version 143 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.