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Protein
Submitted name:

LYSozyme

Gene

lys-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • carbohydrate metabolic process Source: InterPro
  • defense response to Gram-negative bacterium Source: WormBase
  • defense response to Gram-positive bacterium Source: WormBase
  • innate immune response Source: WormBase
Complete GO annotation...

Protein family/group databases

CAZyiGH25. Glycoside Hydrolase Family 25.

Names & Taxonomyi

Protein namesi
Submitted name:
LYSozymeImported
Gene namesi
Name:lys-1Imported
ORF Names:CELE_Y22F5A.4Imported, Y22F5A.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiY22F5A.4; CE16605; WBGene00003090; lys-1.

Subcellular locationi

GO - Cellular componenti

  • apical part of cell Source: WormBase
  • cytoplasmic vesicle Source: WormBase
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1616Sequence analysisAdd
BLAST
Chaini17 – 298282Sequence analysisPRO_5004159237Add
BLAST

Proteomic databases

EPDiO62415.
PaxDbiO62415.

Expressioni

Gene expression databases

BgeeiWBGene00003090.

Interactioni

Protein-protein interaction databases

DIPiDIP-26293N.
IntActiO62415. 4 interactions.
MINTiMINT-1097462.
STRINGi6239.Y22F5A.4.2.

Structurei

3D structure databases

ProteinModelPortaliO62415.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410KAMN. Eukaryota.
ENOG4110I4K. LUCA.
GeneTreeiENSGT00530000064778.
HOGENOMiHOG000018889.
InParanoidiO62415.
OMAiITGNWAT.
OrthoDBiEOG091G0GXF.
PhylomeDBiO62415.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

O62415-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKLAFVTFL FALASARPQD VDSNRVVALP QDNFEVTDIG FEKIKAEPAP
60 70 80 90 100
EVVNNDASYA YAVDISVPTT VSQMNCLKTS RYAAVFIRGF TPFGSGAFDT
110 120 130 140 150
TSVTSIRNAY SAGLGIEVYM TPQPLSSLQG YQQLDALYNG LNGNGITIRS
160 170 180 190 200
VWIQVTSPAN WQKSATTNVN FLNSIISRAK QYGLTVGIYT NQYDWSQITG
210 220 230 240 250
NWATLSSDVL LWYWHVLGGG VTGETPATFD DFRAFGSFKK ASVKQFAQVE
260 270 280 290
SVCSLTVNRD VYVVGIPAAA SSKNTDFFTQ EDISSNNKKI VVGGVIGV
Length:298
Mass (Da):32,379
Last modified:August 1, 1998 - v1
Checksum:i2AB1984E5BD234BF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAA16323.1.
PIRiT26554.
RefSeqiNP_505642.1. NM_073241.3.
UniGeneiCel.1917.

Genome annotation databases

EnsemblMetazoaiY22F5A.4.1; Y22F5A.4.1; WBGene00003090.
Y22F5A.4.2; Y22F5A.4.2; WBGene00003090.
GeneIDi179428.
KEGGicel:CELE_Y22F5A.4.
UCSCiY22F5A.4.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAA16323.1.
PIRiT26554.
RefSeqiNP_505642.1. NM_073241.3.
UniGeneiCel.1917.

3D structure databases

ProteinModelPortaliO62415.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-26293N.
IntActiO62415. 4 interactions.
MINTiMINT-1097462.
STRINGi6239.Y22F5A.4.2.

Protein family/group databases

CAZyiGH25. Glycoside Hydrolase Family 25.

Proteomic databases

EPDiO62415.
PaxDbiO62415.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiY22F5A.4.1; Y22F5A.4.1; WBGene00003090.
Y22F5A.4.2; Y22F5A.4.2; WBGene00003090.
GeneIDi179428.
KEGGicel:CELE_Y22F5A.4.
UCSCiY22F5A.4.1. c. elegans.

Organism-specific databases

CTDi179428.
WormBaseiY22F5A.4; CE16605; WBGene00003090; lys-1.

Phylogenomic databases

eggNOGiENOG410KAMN. Eukaryota.
ENOG4110I4K. LUCA.
GeneTreeiENSGT00530000064778.
HOGENOMiHOG000018889.
InParanoidiO62415.
OMAiITGNWAT.
OrthoDBiEOG091G0GXF.
PhylomeDBiO62415.

Gene expression databases

BgeeiWBGene00003090.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiO62415_CAEEL
AccessioniPrimary (citable) accession number: O62415
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: September 7, 2016
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.