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O62245 (O62245_CAEEL) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 87. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Protein EXO-1 EMBL CAB07612.2
Gene names
Name:exo-1 EMBL CAB07612.2 WormBase F45G2.3
ORF Names:CELE_F45G2.3 EMBL CAB07612.2, F45G2.3 WormBase F45G2.3
OrganismCaenorhabditis elegans [Reference proteome] EMBL CAB07612.2
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length639 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
O62245 [UniParc].

Last modified December 1, 2001. Version 2.
Checksum: 0DE16242F9482DCE

FASTA63972,104
        10         20         30         40         50         60 
MGISGLLPFV KNACRKGNIL ELRGKSVAID VSCLLHRGLT GCMDKIHMGE ETQSYVNYVN 

        70         80         90        100        110        120 
KYVKELLGMG CHVVMVFDGR PLPAKKGTNE ERRELREKRK EHAEMLLAKG LEREARDTYR 

       130        140        150        160        170        180 
LATSISADIV ENTIQYFRSM TNVDIVVAPY EADAQLAYLV QEKLVDAVIT EDSDLIVFGC 

       190        200        210        220        230        240 
EMIYFKWQSA TGECSVYEKC NLKNCFTGEL GGDKFDFVKF RRICILSGCD YLQAGLPGVG 

       250        260        270        280        290        300 
LSTAAKFFSM TSIKDLRTLL RKVPSYLKNP KLKEHVNDEF IRNFEKAENT FKHQIVFDPR 

       310        320        330        340        350        360 
ERCQKPLTPY PKEVLMTGVD DLEEVIDLDS PKKTAPSSKS FAYAGTASTQ RIAIRLALGN 

       370        380        390        400        410        420 
PENKSSIDDQ FLLVQPTPEW SVWGLRYESK GSTLDKISKQ KELEATQCGG AFKLDSPSVK 

       430        440        450        460        470        480 
RVKVASKTTP NDDEDDIVKQ FMADIEKEKK AIKKRKNAPQ VDYNADVLLK KYAEPPPEKR 

       490        500        510        520        530        540 
QKILEVIDDD FSEFFQEKVK ENTKESVAEE KVENSNEELK PPPILRKAVS TPDSARKTHK 

       550        560        570        580        590        600 
FQSPLLNHQN SAPPSLPDRK PAQTSKYFSK PTSENGVPKT KNPFRCPAFV KPTQKVEEKI 

       610        620        630 
EKTTILAALE ENSVPMPSSN TTYRFVGFKS AGLRRKSKQ

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References

[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
Caenorhabditis elegans Sequencing Consortium
Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2 EMBL CAB07612.2.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		Z93382 Genomic DNA. Translation: CAB07612.2.
PIRT22235.
RefSeqNP_499770.1. NM_067369.4.
UniGeneCel.10468.

3D structure databases

ProteinModelPortalO62245.
SMRO62245. Positions 2-369.
ModBaseSearch...

Protein-protein interaction databases

IntActO62245. 1 interaction.
MINTMINT-117279.
STRING6239.F45G2.3.

Proteomic databases

PaxDbO62245.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaF45G2.3; F45G2.3; F45G2.3.
GeneID176765.
KEGGcel:CELE_F45G2.3.
UCSCF45G2.3. c. elegans.

Organism-specific databases

CTD176765.
WormBaseF45G2.3; CE28728; WBGene00009731; exo-1.

Phylogenomic databases

eggNOGCOG0258.
GeneTreeENSGT00510000047676.
HOGENOMHOG000022038.
InParanoidO62245.
KOK10746.
OMAIHMGEET.

Family and domain databases

InterProIPR020045. 5-3_exonuclease_C.
IPR008918. HhH2.
IPR006086. XPG-I_dom.
IPR006084. XPG/Rad2.
IPR006085. XPG_DNA_repair_N.
[Graphical view]
PANTHERPTHR11081. PTHR11081. 1 hit.
PfamPF00867. XPG_I. 1 hit.
PF00752. XPG_N. 1 hit.
[Graphical view]
PRINTSPR00853. XPGRADSUPER.
SMARTSM00279. HhH2. 1 hit.
SM00484. XPGI. 1 hit.
SM00485. XPGN. 1 hit.
[Graphical view]
SUPFAMSSF47807. 5_3_exo_C. 1 hit.
ProtoNetSearch...

Other

NextBio893914.

Entry information

Entry nameO62245_CAEEL
AccessionPrimary (citable) accession number: O62245
Entry history
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: December 1, 2001
Last modified: May 29, 2013
This is version 87 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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