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Protein
Submitted name:

C. Elegans Y-box

Gene

cey-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-CEL-72163. mRNA Splicing - Major Pathway.
R-CEL-72165. mRNA Splicing - Minor Pathway.

Names & Taxonomyi

Protein namesi
Submitted name:
C. Elegans Y-boxImported
Gene namesi
Name:cey-1Imported
ORF Names:CELE_F33A8.3Imported, F33A8.3Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF33A8.3; CE17755; WBGene00000472; cey-1.

Subcellular locationi

GO - Cellular componenti

  • endoplasmic reticulum Source: WormBase
Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiO62213.
PaxDbiO62213.

Interactioni

Protein-protein interaction databases

DIPiDIP-26200N.
IntActiO62213. 1 interaction.
MINTiMINT-1068354.
STRINGi6239.F33A8.3.1.

Structurei

3D structure databases

ProteinModelPortaliO62213.
SMRiO62213. Positions 14-90.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini22 – 9069CSPInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 CSD (cold-shock) domain.UniRule annotation

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
GeneTreeiENSGT00840000129777.
HOGENOMiHOG000016800.
InParanoidiO62213.
OMAiYGFINRT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O62213-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEKNDVAEQ PADKPVKATK VKGTVKWFNV KNGYGFINRT DTNEDIFVHQ
60 70 80 90 100
TAIINNNPNK YLRSLGDNEE VMFDIVEGSK GLEAASVTGP DGGPVQGSKY
110 120 130 140 150
AADRDAENAA RGRGGRGRGR RGGRGGIRHD SGSRDAEEGG APRGGGRGGS
160 170 180 190 200
RRGGGGRGGG RTNSGGEETA RDTDGGERGG RGGGRRGGRG RGGRGRGGRG

GQGGQSEA
Length:208
Mass (Da):21,349
Last modified:August 1, 1998 - v1
Checksum:i2A6C81AAE3D85FC8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CAB04257.1.
PIRiT21689.
RefSeqiNP_496366.1. NM_063965.4.
UniGeneiCel.17447.

Genome annotation databases

EnsemblMetazoaiF33A8.3; F33A8.3; WBGene00000472.
GeneIDi174690.
KEGGicel:CELE_F33A8.3.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CAB04257.1.
PIRiT21689.
RefSeqiNP_496366.1. NM_063965.4.
UniGeneiCel.17447.

3D structure databases

ProteinModelPortaliO62213.
SMRiO62213. Positions 14-90.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-26200N.
IntActiO62213. 1 interaction.
MINTiMINT-1068354.
STRINGi6239.F33A8.3.1.

Proteomic databases

EPDiO62213.
PaxDbiO62213.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF33A8.3; F33A8.3; WBGene00000472.
GeneIDi174690.
KEGGicel:CELE_F33A8.3.

Organism-specific databases

CTDi174690.
WormBaseiF33A8.3; CE17755; WBGene00000472; cey-1.

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
GeneTreeiENSGT00840000129777.
HOGENOMiHOG000016800.
InParanoidiO62213.
OMAiYGFINRT.

Enzyme and pathway databases

ReactomeiR-CEL-72163. mRNA Splicing - Major Pathway.
R-CEL-72165. mRNA Splicing - Minor Pathway.

Miscellaneous databases

NextBioi885082.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO62213_CAEEL
AccessioniPrimary (citable) accession number: O62213
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: May 11, 2016
This is version 120 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.