Protein R12E2.13 - Caenorhabditis elegans

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O61793 (O61793_CAEEL) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 67. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Protein R12E2.13 EMBL CCD65180.1

Gene names

ORF Names:

R12E2.13 EMBL CCD65180.1 WormBase R12E2.13

Organism

Caenorhabditis elegans

Taxonomic identifier

Taxonomic lineage

Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	206 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 1T9F Complete proteome Reference proteome
Gene Ontology (GO)
Cellular component	membrane Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

O61793 [UniParc].

Last modified August 1, 1998. Version 1.
Checksum: 3B3004F1CF6E9DD9
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206

22,786

        10         20         30         40         50         60 
MPKLPLLLSF PLLFFASFAY ADEDFVTCYS VLKFINANDG SRLHSHDVKY GSGSGQQSVT 

        70         80         90        100        110        120 
AVKNSDDINS HWQIFPALNA KCNRGDAIKC GDKIRLKHLT TGTFLHSHHF TAPLSKQHQE 

       130        140        150        160        170        180 
VSAFGSEAES DTGDDWTVIC NGDEWLESEQ FKLRHAVTGS YLSLSGQQFG RPIHGQREVV 

       190        200 
GTDSITGGSA WKVAEGIYIK HQQKDL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.
[2]	"Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown function." Symersky J., Li S., Bunzel R., Schormann N., Luo D., Huang W.Y., QIU S., Gray R., ZHANG Y., ARABASHI A., Lu S., LUAN C.H., Tsao J., DeLucas L., Luo M. Submitted (MAY-2004) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 22-206.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

FO080613 Genomic DNA. Translation: CCD65180.1.

PIR

RefSeq

NP_491320.1. NM_058919.3.

UniGene

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1T9F	X-ray	2.00	A	22-206	[»]

ProteinModelPortal

SMR

O61793. Positions 21-197.

ModBase

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblMetazoa

R12E2.13.1; R12E2.13.1; R12E2.13.
R12E2.13.2; R12E2.13.2; R12E2.13.

GeneID

KEGG

UCSC

R12E2.13.1. c. elegans.

Organism-specific databases

CTD

WormBase

R12E2.13; CE18145; WBGene00020038.

Phylogenomic databases

eggNOG

GeneTree

EMGT00050000017292.

HOGENOM

InParanoid

OMA

PhylomeDB

Gene expression databases

ArrayExpress

Family and domain databases

InterPro

IPR003608. MIR.
IPR016093. MIR_motif.
[Graphical view]

Pfam

PF02815. MIR. 1 hit.
[Graphical view]

SMART

SM00472. MIR. 3 hits.
[Graphical view]

SUPFAM

SSF82109. MIR. 1 hit.

PROSITE

PS50919. MIR. 3 hits.
[Graphical view]

ProtoNet

Other

NextBio

Entry information

Entry name

O61793_CAEEL

Accession

Primary (citable) accession number: O61793

Entry history

Integrated into UniProtKB/TrEMBL:	August 1, 1998
Last sequence update:	August 1, 1998
Last modified:	January 25, 2012
This is version 67 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info