O60907 (TBL1X_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 125.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: F-box-like/WD repeat-containing protein TBL1X Alternative name(s): SMAP55 Transducin beta-like protein 1X Transducin-beta-like protein 1, X-linked | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 577 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange. Ref.10 |
| Subunit structure | Component of the N-Cor repressor complex, at least composed of NCOR1, NCOR2, HDAC3, TBL1X, TBL1R, CORO2A and GPS2. Component of a E3 ubiquitin ligase complex containing UBE2D1, SIAH1, CACYBP/SIP, SKP1, APC and TBL1X. Probably part of other corepressor complexes, that do not contain NCOR1 and NCOR2. Interacts with histones H2B, H3a and H4. Ref.7 |
| Subcellular location | Nucleus Probable. |
| Tissue specificity | Ubiquitous. Ref.1 |
| Domain | The F-box-like domain is related to the F-box domain, and apparently displays the same function as component of ubiquitin E3 ligase complexes By similarity. |
| Sequence similarities | Belongs to the WD repeat EBI family. Contains 1 F-box-like domain. Contains 1 LisH domain. Contains 8 WD repeats. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: O60907-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: O60907-2) The sequence of this isoform differs from the canonical sequence as follows: 1-51: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||
Molecule processing | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 577 | 577 | F-box-like/WD repeat-containing protein TBL1X | PRO_0000051263 | |||||||||||||||
Regions | |||||||||||||||||||
| Domain | 55 – 87 | 33 | LisH | ||||||||||||||||
| Domain | 92 – 137 | 46 | F-box-like | ||||||||||||||||
| Repeat | 230 – 269 | 40 | WD 1 | ||||||||||||||||
| Repeat | 286 – 325 | 40 | WD 2 | ||||||||||||||||
| Repeat | 327 – 366 | 40 | WD 3 | ||||||||||||||||
| Repeat | 369 – 409 | 41 | WD 4 | ||||||||||||||||
| Repeat | 410 – 449 | 40 | WD 5 | ||||||||||||||||
| Repeat | 452 – 500 | 49 | WD 6 | ||||||||||||||||
| Repeat | 503 – 542 | 40 | WD 7 | ||||||||||||||||
| Repeat | 544 – 576 | 33 | WD 8 | ||||||||||||||||
| Compositional bias | 159 – 175 | 17 | Poly-Ala | ||||||||||||||||
Natural variations | |||||||||||||||||||
| Alternative sequence | 1 – 51 | 51 | Missing in isoform 2. | VSP_036905 | |||||||||||||||
Experimental info | |||||||||||||||||||
| Sequence conflict | 316 | 1 | T → A in BAF82098. Ref.2 | ||||||||||||||||
| Sequence conflict | 390 | 1 | T → A in BAF83651. Ref.2 | ||||||||||||||||
Secondary structure | |||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||
| Helix | 56 – 69 | 14 | |||||||||||||||||
| Helix | 73 – 82 | 10 | |||||||||||||||||
| Helix | 85 – 87 | 3 | |||||||||||||||||
| Helix | 92 – 94 | 3 | |||||||||||||||||
| Helix | 99 – 116 | 18 | |||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "X-linked late-onset sensorineural deafness caused by a deletion involving OA1 and a novel gene containing WD-40 repeats." Bassi M.T., Ramesar R.S., Caciotti B., Winship I.M., De Grandi A., Riboni M., Townes P.L., Beighton P., Ballabio A., Borsani G. Am. J. Hum. Genet. 64:1604-1616(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). |
| [3] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). Tissue: Lymph and Pancreas. |
| [5] | "A core SMRT corepressor complex containing HDAC3 and TBL1, a WD40-repeat protein linked to deafness." Guenther M.G., Lane W.S., Fischle W., Verdin E., Lazar M.A., Shiekhattar R. Genes Dev. 14:1048-1057(2000) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY, COMPONENT OF THE N-COR COMPLEX WITH NCOR2 AND HDAC3. |
| [6] | "Both corepressor proteins SMRT and N-CoR exist in large protein complexes containing HDAC3." Li J., Wang J., Wang J., Nawaz Z., Liu J.M., Qin J., Wong J. EMBO J. 19:4342-4350(2000) [PubMed] [Europe PMC] [Abstract] Cited for: COMPONENT OF THE N-COR COMPLEX WITH NCOR2 AND HDAC3. |
| [7] | "Siah-1, SIP, and Ebi collaborate in a novel pathway for beta-catenin degradation linked to p53 responses." Matsuzawa S., Reed J.C. Mol. Cell 7:915-926(2001) [PubMed] [Europe PMC] [Abstract] Cited for: SUBUNIT OF A COMPLEX WITH UBE2D1; CACYBP; SIAH1 AND APC. |
| [8] | "The N-CoR-HDAC3 nuclear receptor corepressor complex inhibits the JNK pathway through the integral subunit GPS2." Zhang J., Kalkum M., Chait B.T., Roeder R.G. Mol. Cell 9:611-623(2002) [PubMed] [Europe PMC] [Abstract] Cited for: COMPONENT OF THE N-COR COMPLEX WITH NCOR1; NCOR2; GPS2; TBL1R AND HDAC3. |
| [9] | "Purification and functional characterization of the human N-CoR complex: the roles of HDAC3, TBL1 and TBLR1." Yoon H.-G., Chan D.W., Huang Z.-Q., Li J., Fondell J.D., Qin J., Wong J. EMBO J. 22:1336-1346(2003) [PubMed] [Europe PMC] [Abstract] Cited for: COMPONENT OF THE N-COR COMPLEX WITH TBL1R; CORO2A AND HDAC3, HISTONE-BINDING. |
| [10] | "A corepressor/coactivator exchange complex required for transcriptional activation by nuclear receptors and other regulated transcription factors." Perissi V., Aggarwal A., Glass C.K., Rose D.W., Rosenfeld M.G. Cell 116:511-526(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, RECRUITMENT OF 19S PROTEASOME COMPLEX. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | Y12781 mRNA. Translation: CAA73319.1. AK289409 mRNA. Translation: BAF82098.1. AK290962 mRNA. Translation: BAF83651.1. AC003036 Genomic DNA. No translation available. BC032708 mRNA. Translation: AAH32708.1. BC052304 mRNA. Translation: AAH52304.1. | ||||||||||||||||||||||||
| IPI | IPI00218132. IPI00640917. | ||||||||||||||||||||||||
| RefSeq | NP_001132938.1. NM_001139466.1. NP_001132939.1. NM_001139467.1. NP_001132940.1. NM_001139468.1. NP_005638.1. NM_005647.3. | ||||||||||||||||||||||||
| UniGene | Hs.495656. | ||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | O60907. | ||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||||||||
| IntAct | O60907. 6 interactions. | ||||||||||||||||||||||||
| STRING | 9606.ENSP00000217964. | ||||||||||||||||||||||||
PTM databases | |||||||||||||||||||||||||
| PhosphoSite | O60907. | ||||||||||||||||||||||||
Proteomic databases | |||||||||||||||||||||||||
| PaxDb | O60907. | ||||||||||||||||||||||||
| PRIDE | O60907. | ||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||
| Ensembl | ENST00000217964; ENSP00000217964; ENSG00000101849. ENST00000380961; ENSP00000370348; ENSG00000101849. ENST00000407597; ENSP00000385988; ENSG00000101849. ENST00000424279; ENSP00000394097; ENSG00000101849. ENST00000536365; ENSP00000445317; ENSG00000101849. | ||||||||||||||||||||||||
| GeneID | 6907. | ||||||||||||||||||||||||
| KEGG | hsa:6907. | ||||||||||||||||||||||||
| UCSC | uc004csq.4. human. | ||||||||||||||||||||||||
Organism-specific databases | |||||||||||||||||||||||||
| CTD | 6907. | ||||||||||||||||||||||||
| GeneCards | GC0XP009431. | ||||||||||||||||||||||||
| HGNC | HGNC:11585. TBL1X. | ||||||||||||||||||||||||
| HPA | CAB005363. | ||||||||||||||||||||||||
| MIM | 300196. gene. | ||||||||||||||||||||||||
| neXtProt | NX_O60907. | ||||||||||||||||||||||||
| PharmGKB | PA36349. | ||||||||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||
| eggNOG | COG2319. | ||||||||||||||||||||||||
| HOGENOM | HOG000220902. | ||||||||||||||||||||||||
| HOVERGEN | HBG050240. | ||||||||||||||||||||||||
| InParanoid | O60907. | ||||||||||||||||||||||||
| KO | K04508. | ||||||||||||||||||||||||
| OMA | RAHSVNN. | ||||||||||||||||||||||||
| OrthoDB | EOG412M5M. | ||||||||||||||||||||||||
| PhylomeDB | O60907. | ||||||||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||||||||
| Reactome | REACT_111102. Signal Transduction. REACT_111217. Metabolism. | ||||||||||||||||||||||||
Gene expression databases | |||||||||||||||||||||||||
| ArrayExpress | O60907. | ||||||||||||||||||||||||
| Bgee | O60907. | ||||||||||||||||||||||||
| CleanEx | HS_TBL1X. | ||||||||||||||||||||||||
| Genevestigator | O60907. | ||||||||||||||||||||||||
| GermOnline | ENSG00000101849. Homo sapiens. | ||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||
| Gene3D | 2.130.10.10. 2 hits. | ||||||||||||||||||||||||
| InterPro | IPR020472. G-protein_beta_WD-40_rep. IPR006594. LisH_dimerisation. IPR013720. LisH_dimerisation_subgr. IPR015943. WD40/YVTN_repeat-like_dom. IPR001680. WD40_repeat. IPR019775. WD40_repeat_CS. IPR017986. WD40_repeat_dom. [Graphical view] | ||||||||||||||||||||||||
| Pfam | PF08513. LisH. 1 hit. PF00400. WD40. 7 hits. [Graphical view] | ||||||||||||||||||||||||
| PRINTS | PR00320. GPROTEINBRPT. | ||||||||||||||||||||||||
| SMART | SM00667. LisH. 1 hit. SM00320. WD40. 8 hits. [Graphical view] | ||||||||||||||||||||||||
| SUPFAM | SSF50978. WD40_like. 1 hit. | ||||||||||||||||||||||||
| PROSITE | PS50896. LISH. 1 hit. PS00678. WD_REPEATS_1. 4 hits. PS50082. WD_REPEATS_2. 6 hits. PS50294. WD_REPEATS_REGION. 1 hit. [Graphical view] | ||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||
Other | |||||||||||||||||||||||||
| ChiTaRS | TBL1X. human. | ||||||||||||||||||||||||
| EvolutionaryTrace | O60907. | ||||||||||||||||||||||||
| GenomeRNAi | 6907. | ||||||||||||||||||||||||
| NextBio | 27011. | ||||||||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||||||||
Entry information
| Entry name | TBL1X_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O60907 Secondary accession number(s): A8K044, A8K4J7, Q86UY2 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
