O60858 (TRI13_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 125.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: E3 ubiquitin-protein ligase TRIM13 EC=6.3.2.- Alternative name(s): B-cell chronic lymphocytic leukemia tumor suppressor Leu5 Leukemia-associated protein 5 Putative tumor suppressor RFP2 RING finger protein 77 Ret finger protein 2 Tripartite motif-containing protein 13 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 407 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | E3 ubiquitin ligase involved in the retrotranslocation and turnover of membrane and secretory proteins from the ER through a set of processes named ER-associated degradation (ERAD). This process acts on misfolded proteins as well as in the regulated degradation of correctly folded proteins. Enhances ionizing radiation-induced p53/TP53 stability and apoptosis via ubiquitinating MDM2 and AKT1 and decreasing AKT1 kinase activity through MDM2 and AKT1 proteasomal degradation. Regulates ER stress-induced autophagy, and may act as a tumor suppressor. Ref.12 Ref.13 Ref.14 |
| Pathway | |
| Subunit structure | Interacts (via C-terminal domain) with VCP. Interacts with AKT1; the interaction ubiquitinates AKT1 and leads to its proteasomal degradation. Interacts with MDM2; the interaction ubiquitinates AKT1 and leads to its proteasomal degradation. Interacts with p62/SQSTM1. Ref.12 Ref.13 Ref.14 |
| Subcellular location | Endoplasmic reticulum membrane; Single-pass membrane protein. Note: Concentrates and colocalizes with p62/SQSTM1 and ZFYVE1 at the perinuclear endoplasmic reticulum. Ref.12 Ref.13 Ref.14 |
| Domain | The coiled-coil domain is required for the induction of autophagy during endoplasmic reticulum (ER) stress. The RING-type zinc finger is required for auto-polyubiquitination. The C-terminal domain transmembrane domain is indispensable for the localization to the ER. |
| Post-translational modification | Auto-ubiquitinated; requires the RING-type zinc finger. Auto-polyubiquitination leads to proteasomal degradation. |
| Miscellaneous | Located on chromosome 13 within the minimal deletion region for B-cell chronic lymphocytic leukemia. |
| Sequence similarities | Belongs to the TRIM/RBCC family. Contains 1 B box-type zinc finger. Contains 1 RING-type zinc finger. |
Ontologies
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: O60858-1) Also known as: Alpha; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: O60858-2) Also known as: Beta; The sequence of this isoform differs from the canonical sequence as follows: 175-175: L → D 176-407: Missing. | ||||||
| Isoform 3 (identifier: O60858-3) The sequence of this isoform differs from the canonical sequence as follows: 1-1: M → MDVM |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 407 | 407 | E3 ubiquitin-protein ligase TRIM13 | PRO_0000056028 | |||||
Regions | |||||||||
| Transmembrane | 317 – 337 | 21 | Helical; Potential | ||||||
| Zinc finger | 10 – 58 | 49 | RING-type | ||||||
| Zinc finger | 89 – 131 | 43 | B box-type | ||||||
| Coiled coil | 172 – 200 | 29 | Potential | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 | 1 | M → MDVM in isoform 3. | VSP_038142 | |||||
| Alternative sequence | 175 | 1 | L → D in isoform 2. | VSP_005746 | |||||
| Alternative sequence | 176 – 407 | 232 | Missing in isoform 2. | VSP_005747 | |||||
| Natural variant | 355 | 1 | S → T. Ref.1 Ref.3 Ref.5 Ref.9 Corresponds to variant rs1056543 [ dbSNP | Ensembl ]. | VAR_013512 | |||||
Experimental info | |||||||||
| Mutagenesis | 13 | 1 | C → A: Absence of polyubiquitination. Stability of protein increased. No enhanced apoptosis on ionizing radiation induction. No ubiquitination of AKT1 or MDM2. Decreased p53/TP53 stability. No effect on induction of autophagy during ER stress. Ref.12 Ref.13 Ref.14 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "A cosmid and cDNA fine physical map of a human chromosome 13q14 region frequently lost in B-cell chronic lymphocytic leukemia and identification of a new putative tumor suppressor gene, Leu5." Kapanadze B., Kashuba V., Baranova A., Rasool O., van Everdink W.J., Liu Y., Syomov A., Corcoran M., Poltaraus A., Brodyansky V., Syomova N., Kazakov A., Ibbotson R., van den Berg A., Gizatullin R., Fedorova L., Sulimova G., Zelenin A. Yankovsky N.FEBS Lett. 426:266-270(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANT THR-355. Tissue: Leukemia. |
| [2] | "Nucleotide sequence, transcription map, and mutation analysis of the 13q14 chromosomal region deleted in B-cell chronic lymphocytic leukemia." Migliazza A., Bosch F., Komatsu H., Cayanis E., Martinotti S., Toniato E., Guccione E., Qu X., Chien M., Murty V.V., Gaidano G., Inghirami G., Zhang P., Fischer S., Kalachikov S.M., Russo J., Edelman I., Efstratiadis A., Dalla-Favera R. Blood 97:2098-2104(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], ALTERNATIVE SPLICING (ISOFORM 1). |
| [3] | "The tripartite motif family identifies cell compartments." Reymond A., Meroni G., Fantozzi A., Merla G., Cairo S., Luzi L., Riganelli D., Zanaria E., Messali S., Cainarca S., Guffanti A., Minucci S., Pelicci P.G., Ballabio A. EMBO J. 20:2140-2151(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), VARIANT THR-355. |
| [4] | "RFP2, c13ORF1, and FAM10A4 are the most likely tumor suppressor gene candidates for B-cell chronic lymphocytic leukemia." van Everdink W.J., Baranova A., Lummen C., Tyazhelova T., Looman M.W., Ivanov D., Verlind E., Pestova A., Faber H., van der Veen A.Y., Yankovsky N., Vellenga E., Buys C.H. Cancer Genet. Cytogenet. 146:48-57(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [5] | "RFP2 putative tumor suppressor gene: genomic organization, multiple mRNA isoforms and evaluation as a B-cell chronic lymphocytic leukaemia candidate." Baranova A.V., Sangfelt O., Ivanov D.V., Borodina T.A., Yankovsky N.K. Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1), VARIANT THR-355. |
| [6] | Corcoran M.M., Hammarsund M., Grander D., Oscier D., Kapanadze B., Einhorn S., Sangfelt O. Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [7] | "Alternative isoform of candidate tumor suppressor RFP2." Corcoran M.M., Lerner M., Sangfelt O. Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3). |
| [8] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [9] | "The DNA sequence and analysis of human chromosome 13." Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T. Ross M.T.Nature 428:522-528(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT THR-355. |
| [10] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [11] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Blood and Lung. |
| [12] | "The RBCC gene RFP2 (Leu5) encodes a novel transmembrane E3 ubiquitin ligase involved in ERAD." Lerner M., Corcoran M., Cepeda D., Nielsen M.L., Zubarev R., Ponten F., Uhlen M., Hober S., Grander D., Sangfelt O. Mol. Biol. Cell 18:1670-1682(2007) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION AS AN E3 UBIQUITIN LIGASE, AUTOUBIQUITINATION, SUBCELLULAR LOCATION, MUTAGENESIS OF CYS-13, MASS SPECTROMETRY, INTERACTION WITH VCP. |
| [13] | "Ret finger protein 2 enhances ionizing radiation-induced apoptosis via degradation of AKT and MDM2." Joo H.M., Kim J.Y., Jeong J.B., Seong K.M., Nam S.Y., Yang K.H., Kim C.S., Kim H.S., Jeong M., An S., Jin Y.W. Eur. J. Cell Biol. 90:420-431(2011) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION AS AN E3 UBIQUITIN LIGASE, AUTOUBIQUITINATION, SUBCELLULAR LOCATION, MUTAGENESIS OF CYS-13, MASS SPECTROMETRY, INTERACTION WITH MDM2 AND AKT1. |
| [14] | "TRIM13 regulates ER stress induced autophagy and clonogenic ability of the cells." Tomar D., Singh R., Singh A.K., Pandya C.D., Singh R. Biochim. Biophys. Acta 1823:316-326(2012) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, AUTOUBIQUITINATION, SUBCELLULAR LOCATION, MUTAGENESIS OF CYS-13, INTERACTION WITH SQSTM1. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AJ224819 mRNA. Translation: CAA12136.1. AF279660 Genomic DNA. Translation: AAK13059.1. AF220127 mRNA. Translation: AAG53500.1. AF220128 mRNA. Translation: AAG53501.1. AY191002 mRNA. Translation: AAO38979.1. AF241849 Genomic DNA. Translation: AAK51624.1. AF241850 mRNA. Translation: AAF91315.1. AY455758 mRNA. Translation: AAR31110.1. AY764035 mRNA. Translation: AAV51406.1. AK314496 mRNA. Translation: BAG37096.1. AL137060 Genomic DNA. Translation: CAC43391.1. AL137060 Genomic DNA. Translation: CAH72825.1. AL137060 Genomic DNA. Translation: CAH72826.1. CH471075 Genomic DNA. Translation: EAX08844.1. CH471075 Genomic DNA. Translation: EAX08845.1. BC003579 mRNA. Translation: AAH03579.1. BC063407 mRNA. Translation: AAH63407.1. |
| IPI | IPI00477161. IPI00607858. IPI00944555. |
| RefSeq | NP_001007279.1. NM_001007278.1. NP_005789.2. NM_005798.3. NP_434698.1. NM_052811.2. NP_998755.1. NM_213590.1. |
| UniGene | Hs.436922. |
3D structure databases | |
| ProteinModelPortal | O60858. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000298772. |
PTM databases | |
| PhosphoSite | O60858. |
Proteomic databases | |
| PaxDb | O60858. |
| PRIDE | O60858. |
Protocols and materials databases | |
| DNASU | 10206. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000298772; ENSP00000298772; ENSG00000204977. ENST00000356017; ENSP00000348299; ENSG00000204977. ENST00000378182; ENSP00000367424; ENSG00000204977. ENST00000378183; ENSP00000367425; ENSG00000204977. ENST00000420995; ENSP00000412943; ENSG00000204977. ENST00000442421; ENSP00000404586; ENSG00000204977. ENST00000457662; ENSP00000399206; ENSG00000204977. |
| GeneID | 10206. |
| KEGG | hsa:10206. |
| UCSC | uc001vdp.1. human. uc001vdq.1. human. |
Organism-specific databases | |
| CTD | 10206. |
| GeneCards | GC13P050570. |
| HGNC | HGNC:9976. TRIM13. |
| HPA | HPA000367. |
| MIM | 605661. gene. |
| neXtProt | NX_O60858. |
| PharmGKB | PA162406947. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG238872. |
| HOVERGEN | HBG056536. |
| InParanoid | O60858. |
| KO | K12003. |
| OMA | QPLNIFC. |
| OrthoDB | EOG46MBJP. |
| PhylomeDB | O60858. |
Enzyme and pathway databases | |
| UniPathway | UPA00143. |
Gene expression databases | |
| Bgee | O60858. |
| CleanEx | HS_TRIM13. |
| Genevestigator | O60858. |
| GermOnline | ENSG00000204977. Homo sapiens. |
Family and domain databases | |
| Gene3D | 3.30.40.10. 1 hit. |
| InterPro | IPR000315. Znf_B-box. IPR001841. Znf_RING. IPR013083. Znf_RING/FYVE/PHD. IPR017907. Znf_RING_CS. [Graphical view] |
| Pfam | PF00643. zf-B_box. 1 hit. [Graphical view] |
| SMART | SM00336. BBOX. 1 hit. SM00184. RING. 1 hit. [Graphical view] |
| PROSITE | PS50119. ZF_BBOX. 1 hit. PS00518. ZF_RING_1. 1 hit. PS50089. ZF_RING_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 10206. |
| NextBio | 38634. |
| SOURCE | Search... |
Entry information
| Entry name | TRI13_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O60858 Secondary accession number(s): B2RB49 Q9C021 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 13 Human chromosome 13: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with
