O60336 (MABP1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 87.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Mitogen-activated protein kinase-binding protein 1 Alternative name(s): JNK-binding protein 1 Short name=JNKBP-1 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1514 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Function | Involved in JNK signaling pathway By similarity. |
| Subunit structure | Interacts with MAPK10 By similarity. |
| Sequence similarities | Contains 12 WD repeats. |
| Sequence caution | The sequence BAA25522.2 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat WD repeat |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| None. [Check GOA] | |
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: O60336-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: O60336-2) The sequence of this isoform differs from the canonical sequence as follows: 274-279: Missing. 1134-1410: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: O60336-3) The sequence of this isoform differs from the canonical sequence as follows: 274-396: Missing. 1411-1412: Missing. | ||||||
| Isoform 4 (identifier: O60336-4) The sequence of this isoform differs from the canonical sequence as follows: 1-499: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 5 (identifier: O60336-5) The sequence of this isoform differs from the canonical sequence as follows: 214-215: NA → RC 216-1514: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 6 (identifier: O60336-6) The sequence of this isoform differs from the canonical sequence as follows: 274-279: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1514 | 1514 | Mitogen-activated protein kinase-binding protein 1 | PRO_0000334158 | |||||
Regions | |||||||||
| Repeat | 88 – 129 | 42 | WD 1 | ||||||
| Repeat | 132 – 173 | 42 | WD 2 | ||||||
| Repeat | 175 – 213 | 39 | WD 3 | ||||||
| Repeat | 276 – 315 | 40 | WD 4 | ||||||
| Repeat | 342 – 381 | 40 | WD 5 | ||||||
| Repeat | 387 – 436 | 50 | WD 6 | ||||||
| Repeat | 477 – 516 | 40 | WD 7 | ||||||
| Repeat | 519 – 561 | 43 | WD 8 | ||||||
| Repeat | 565 – 606 | 42 | WD 9 | ||||||
| Repeat | 614 – 653 | 40 | WD 10 | ||||||
| Repeat | 659 – 698 | 40 | WD 11 | ||||||
| Repeat | 701 – 740 | 40 | WD 12 | ||||||
| Compositional bias | 1041 – 1047 | 7 | Poly-Glu | ||||||
| Compositional bias | 1114 – 1119 | 6 | Poly-Ser | ||||||
| Compositional bias | 1387 – 1390 | 4 | Poly-Pro | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 499 | 499 | Missing in isoform 4. | VSP_033629 | |||||
| Alternative sequence | 214 – 215 | 2 | NA → RC in isoform 5. | VSP_033630 | |||||
| Alternative sequence | 216 – 1514 | 1299 | Missing in isoform 5. | VSP_033631 | |||||
| Alternative sequence | 274 – 396 | 123 | Missing in isoform 3. | VSP_033632 | |||||
| Alternative sequence | 274 – 279 | 6 | Missing in isoform 2 and isoform 6. | VSP_033633 | |||||
| Alternative sequence | 1134 – 1410 | 277 | Missing in isoform 2. | VSP_033634 | |||||
| Alternative sequence | 1411 – 1412 | 2 | Missing in isoform 3. | VSP_033635 | |||||
| Natural variant | 204 | 1 | Y → S. Corresponds to variant rs4354909 [ dbSNP | Ensembl ]. | VAR_043343 | |||||
| Natural variant | 313 | 1 | L → V. Corresponds to variant rs1201689 [ dbSNP | Ensembl ]. | VAR_043344 | |||||
| Natural variant | 1240 | 1 | R → P. Ref.1 Ref.2 Ref.5 Ref.8 Corresponds to variant rs3959569 [ dbSNP | Ensembl ]. | VAR_043345 | |||||
Experimental info | |||||||||
| Sequence conflict | 843 | 1 | P → S in AAH36660. Ref.8 | ||||||
| Sequence conflict | 1444 | 1 | K → R in AL833267. Ref.5 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Alternative splice variants encoding unstable protein domains exist in the human brain." Homma K., Kikuno R.F., Nagase T., Ohara O., Nishikawa K. J. Mol. Biol. 343:1207-1220(2004) [PubMed: 15491607] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3), VARIANT PRO-1240. Tissue: Brain. |
| [2] | "Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro." Nagase T., Ishikawa K., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O. DNA Res. 5:31-39(1998) [PubMed: 9628581] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT PRO-1240. Tissue: Brain. |
| [3] | "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones." Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T. DNA Res. 9:99-106(2002) [PubMed: 12168954] [Abstract] Cited for: SEQUENCE REVISION. |
| [4] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 5). Tissue: Testis. |
| [5] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 6), VARIANT PRO-1240. Tissue: Skeletal muscle. |
| [6] | "Analysis of the DNA sequence and duplication history of human chromosome 15." Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., Abouelleil A. Nusbaum C.Nature 440:671-675(2006) [PubMed: 16572171] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2; 3 AND 4), VARIANT PRO-1240. Tissue: Testis. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AB177850 mRNA. Translation: BAD66828.1. AB011168 mRNA. Translation: BAA25522.2. Different initiation. AK292414 mRNA. Translation: BAF85103.1. AL833267 mRNA. No translation available. AC020659 Genomic DNA. No translation available. AC073657 Genomic DNA. No translation available. CH471125 Genomic DNA. Translation: EAW92516.1. BC036660 mRNA. Translation: AAH36660.1. BC113983 mRNA. Translation: AAI13984.1. BC114493 mRNA. Translation: AAI14494.1. |
| IPI | IPI00167154. IPI00479587. IPI00782945. IPI00783044. IPI00943806. IPI00963846. |
| PIR | T00270. |
| RefSeq | NP_001122080.1. NM_001128608.1. NP_055809.2. NM_014994.2. |
| UniGene | Hs.513661. |
3D structure databases | |
| ProteinModelPortal | O60336. |
| SMR | O60336. Positions 39-208, 349-374, 387-430, 473-734. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | O60336. 1 interaction. |
| MINT | MINT-2870106. |
| STRING | O60336. |
PTM databases | |
| PhosphoSite | O60336. |
Proteomic databases | |
| PRIDE | O60336. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000389931; ENSP00000374581; ENSG00000137802. ENST00000456763; ENSP00000393099; ENSG00000137802. |
| GeneID | 23005. |
| KEGG | hsa:23005. |
| UCSC | uc001zok.2. human. uc010bci.1. human. uc010bcj.1. human. |
Organism-specific databases | |
| CTD | 23005. |
| GeneCards | GC15P042067. |
| H-InvDB | HIX0022002. |
| HGNC | HGNC:29536. MAPKBP1. |
| HPA | HPA030832. |
| neXtProt | NX_O60336. |
| PharmGKB | PA142671479. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | prNOG14910. |
| GeneTree | ENSGT00530000063072. |
| HOVERGEN | HBG108669. |
| InParanoid | O60336. |
| OMA | GNRREDL. |
| PhylomeDB | O60336. |
Gene expression databases | |
| ArrayExpress | O60336. |
| Bgee | O60336. |
| CleanEx | HS_MAPKBP1. |
| Genevestigator | O60336. |
Family and domain databases | |
| InterPro | IPR015943. WD40/YVTN_repeat-like_dom. IPR001680. WD40_repeat. IPR011046. WD40_repeat-like_dom. IPR017986. WD40_repeat_dom. [Graphical view] |
| Gene3D | G3DSA:2.130.10.10. WD40/YVTN_repeat-like. 5 hits. |
| Pfam | PF00400. WD40. 10 hits. [Graphical view] |
| SMART | SM00320. WD40. 12 hits. [Graphical view] |
| SUPFAM | SSF50978. WD40_like. 2 hits. |
| PROSITE | PS00678. WD_REPEATS_1. False negative. PS50082. WD_REPEATS_2. 1 hit. PS50294. WD_REPEATS_REGION. 3 hits. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | MABP1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: O60336 Secondary accession number(s): A6NM93 Q5W9G9 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 15 Human chromosome 15: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| SIMILARITY comments Index of protein domains and families |

Clusters with