Reviewed, UniProtKB/Swiss-Prot O60258 (FGF17_HUMAN)

Names and origin

Protein names

Recommended name:
    Fibroblast growth factor 17
      Short name=FGF-17

Gene names

Name:	FGF17
ORF Names:	UNQ161/PRO187

Organism

Homo sapiens (Human)

Taxonomic identifier

9606 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo

Protein attributes

Sequence length	216 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Function	May be a signaling molecule in the induction and patterning of the embryonic brain.
Subcellular location	Secreted.
Tissue specificity	Preferentially expressed in the embryonic brain.
Developmental stage	Detected in embryos at E14.5, but not at E10.5 and E19.5. Preferentially expressed in the neuroepithelia of the isthmus and septum of the embryonic brain at E14.5.
Sequence similarities	Belongs to the heparin-binding growth factors family.

Ontologies

Keywords
Cellular component	Secreted
Coding sequence diversity	Alternative splicing
Domain	Signal
Molecular function	Growth factor
PTM	Glycoprotein
Gene Ontology (GO)
Biological process	cell-cell signaling Ref.1 Traceable author statement. Source: ProtInc fibroblast growth factor receptor signaling pathway Inferred from Experiment. Source: Reactome nervous system development Ref.1 Traceable author statement. Source: ProtInc
Cellular component	extracellular space Ref.1 Traceable author statement. Source: ProtInc
Molecular function	growth factor activity Ref.1 Traceable author statement. Source: ProtInc
Complete GO annotation...

Alternative products

This entry describes 2 isoforms produced by alternative splicing. [Align] [Select]

Isoform 1 (identifier: O60258-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

Isoform 2 (identifier: O60258-2)

The sequence of this isoform differs from the canonical sequence as follows:
     25-35: Missing.

Notes: No experimental confirmation available.

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 22	22	Potential
	Chain	23 – 216	194	Fibroblast growth factor 17		PRO_0000008985
Amino acid modifications
	Glycosylation	137	1	N-linked (GlcNAc...) Potential
Natural variations
	Alternative sequence	25 – 35	11	Missing in isoform 2.		VSP_008715

Sequences

	Sequence		Length	Mass (Da)
	Isoform 1 [UniParc]. Last modified August 1, 1998. Version 1. Checksum: 2EE0288675220F4C	FASTA	216	24,891
	10 20 30 40 50 60 MGAARLLPNL TLCLQLLILC CQTQGENHPS PNFNQYVRDQ GAMTDQLSRR QIREYQLYSR 70 80 90 100 110 120 TSGKHVQVTG RRISATAEDG NKFAKLIVET DTFGSRVRIK GAESEKYICM NKRGKLIGKP 130 140 150 160 170 180 SGKSKDCVFT EIVLENNYTA FQNARHEGWF MAFTRQGRPR QASRSRQNQR EAHFIKRLYQ 190 200 210 GQLPFPNHAE KQKQFEFVGS APTRRTKRTR RPQPLT
	Isoform 2 [UniParc]. Checksum: 7DCA34B12D3602A7		205	23,669
	10 20 30 40 50 60 MGAARLLPNL TLCLQLLILC CQTQYVRDQG AMTDQLSRRQ IREYQLYSRT SGKHVQVTGR 70 80 90 100 110 120 RISATAEDGN KFAKLIVETD TFGSRVRIKG AESEKYICMN KRGKLIGKPS GKSKDCVFTE 130 140 150 160 170 180 IVLENNYTAF QNARHEGWFM AFTRQGRPRQ ASRSRQNQRE AHFIKRLYQG QLPFPNHAEK 190 200 QKQFEFVGSA PTRRTKRTRR PQPLT

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Structure and expression of a novel fibroblast growth factor, FGF-17, preferentially expressed in the embryonic brain." Hoshikawa M., Ohbayashi N., Yonamine A., Konishi M., Ozaki K., Fukui S., Itoh N. Biochem. Biophys. Res. Commun. 244:187-191(1998) [PubMed: 9514906] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Fetal brain.
[2]	"NIEHS-SNPs, environmental genome project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu)." Rieder M.J., Braun A.C., Montoya M.A., Chung M.-W., Nguyen C.P., Nguyen D.A., Livingston R.J., Poel C.L., Robertson P.D., Schackwitz W.S., Sherwood J.K., Witrak L.A., Nickerson D.A. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]	"The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment." Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J., Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P., Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E. , Heldens S., Huang A., Kim H.S., Klimowski L., Jin Y., Johnson S., Lee J., Lewis L., Liao D., Mark M.R., Robbie E., Sanchez C., Schoenfeld J., Seshagiri S., Simmons L., Singh J., Smith V., Stinson J., Vagts A., Vandlen R.L., Watanabe C., Wieand D., Woods K., Xie M.-H., Yansura D.G., Yi S., Yu G., Yuan J., Zhang M., Zhang Z., Goddard A.D., Wood W.I., Godowski P.J., Gray A.M. Genome Res. 13:2265-2270(2003) [PubMed: 12975309] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
[4]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AB009249 mRNA. Translation: BAA25429.1. AF497475 Genomic DNA. Translation: AAM09570.1. AY358869 mRNA. Translation: AAQ89228.1. BC069475 mRNA. Translation: AAH69475.1. BC105131 mRNA. Translation: AAI05132.1. BC113489 mRNA. Translation: AAI13490.1.
RefSeq	NP_003858.1.
UniGene	Hs.248192
3D structure databases
HSSP	HSSP built from PDB template 1QQK based on UniProtKB Q02195.
SMR	O60258. Positions 33-178.
ModBase	Search...
Polymorphism databases
NIEHS-SNPs	Search...
Genome annotation databases
Ensembl	ENSG00000158815. Homo sapiens. [Contig view]
GeneID	8822.
KEGG	hsa:8822.
Organism-specific databases
H-InvDB	HIX0007357.
HGNC	HGNC:3673. FGF17.
MIM	603725. gene.
PharmGKB	PA28112.
GenAtlas	Search...
GeneCards	Search...
Phylogenomic databases
HOGENOM	O60258.
HOVERGEN	O60258.
Enzyme and pathway databases
Reactome	REACT_9470. Signaling by FGFR.
Gene expression databases
ArrayExpress	O60258.
CleanEx	HS_FGF17.
GermOnline	ENSG00000158815. Homo sapiens.
Family and domain databases
InterPro	IPR002348. IL1_HBGF. [Graphical view]
PANTHER	PTHR11486. IL1_HBGF. 1 hit.
Pfam	PF00167. FGF. 1 hit. [Graphical view]
PRINTS	PR00262. IL1HBGF.
ProDom	PD000831. IL1_HBGF. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00442. FGF. 1 hit. [Graphical view]
PROSITE	PS00247. HBGF_FGF. 1 hit. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	33096.
SOURCE	Search...

Entry information

Entry name

FGF17_HUMAN

Accession

Primary (citable) accession number: O60258
Secondary accession number(s): Q2M2W1

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 15, 1999
Last sequence update:	August 1, 1998
Last modified:	November 4, 2008
This is version 76 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HPI (Human Proteome Initiative)