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Protein

Uncharacterized RNA-binding protein C23E6.01c

Gene

SPBC23E6.01c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized RNA-binding protein C23E6.01c
Gene namesi
ORF Names:SPBC23E6.01c, SPBPJ758.01
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC23E6.01c.
PomBaseiSPBC23E6.01c.

Subcellular locationi

GO - Cellular componenti

  • cytoplasmic mRNA processing body Source: PomBase
  • cytosol Source: PomBase
  • U2-type prespliceosome Source: PomBase
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 473473Uncharacterized RNA-binding protein C23E6.01cPRO_0000082025Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei64 – 641Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiO60176.

PTM databases

iPTMnetiO60176.

Interactioni

Protein-protein interaction databases

BioGridi277078. 60 interactions.
MINTiMINT-4677817.

Structurei

3D structure databases

ProteinModelPortaliO60176.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini95 – 16571RRM 1PROSITE-ProRule annotationAdd
BLAST
Domaini188 – 26073RRM 2PROSITE-ProRule annotationAdd
BLAST
Domaini305 – 37066RRM 3PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 3 RRM (RNA recognition motif) domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

HOGENOMiHOG000186228.
InParanoidiO60176.
OrthoDBiEOG7PZS6P.
PhylomeDBiO60176.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O60176-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSSPTESEI LPKESHNSID EQSQQPANTD TLVKDNSFNE QDDQEVDNDY
60 70 80 90 100
KSNDEPVQSQ DPISPNMASN ESGNSENTSN YGSSRDENVY QKTTLWMGEL
110 120 130 140 150
EPWVTEAFIQ QVWNTLGKAV KVKLIRNRYT GMNAGYCFVE FASPHEASSA
160 170 180 190 200
MSMNNKPIPG TNHLFKLNWA SGGGLREKSI SKASEYSIFV GDLSPNVNEF
210 220 230 240 250
DVYSLFASRY NSCKSAKIMT DPQTNVSRGY GFVRFTDEND QKSALAEMQG
260 270 280 290 300
QICGDRPIRV GLATPKSKAH VFSPVNVVPV SMPPVGFYSA AQPVPQFADT
310 320 330 340 350
ANSTVFVGGL SKFVSEEELK YLFQNFGEIV YVKIPPGKGC GFVQFVNRQS
360 370 380 390 400
AEIAINQLQG YPLGNSRIRL SWGRNQNPIA APALNYQSQV SQTTIPATSL
410 420 430 440 450
FPAMSLPPQA QFSPYPAVAP SPLALQTRGA PIGMEISIGS PALVPDQMHI
460 470
PENGNSDTMP VPNTQGKHLS AEE
Length:473
Mass (Da):51,705
Last modified:December 6, 2002 - v2
Checksum:iB18956F2AAD3F26B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAB83010.1.
RefSeqiNP_596601.2. NM_001022521.3.

Genome annotation databases

EnsemblFungiiSPBC23E6.01c.1; SPBC23E6.01c.1:pep; SPBC23E6.01c.
GeneIDi2540551.
KEGGispo:SPBC23E6.01c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAB83010.1.
RefSeqiNP_596601.2. NM_001022521.3.

3D structure databases

ProteinModelPortaliO60176.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi277078. 60 interactions.
MINTiMINT-4677817.

PTM databases

iPTMnetiO60176.

Proteomic databases

MaxQBiO60176.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC23E6.01c.1; SPBC23E6.01c.1:pep; SPBC23E6.01c.
GeneIDi2540551.
KEGGispo:SPBC23E6.01c.

Organism-specific databases

EuPathDBiFungiDB:SPBC23E6.01c.
PomBaseiSPBC23E6.01c.

Phylogenomic databases

HOGENOMiHOG000186228.
InParanoidiO60176.
OrthoDBiEOG7PZS6P.
PhylomeDBiO60176.

Miscellaneous databases

NextBioi20801677.
PROiO60176.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-64, IDENTIFICATION BY MASS SPECTROMETRY.

Entry informationi

Entry nameiYG41_SCHPO
AccessioniPrimary (citable) accession number: O60176
Secondary accession number(s): Q9P7F0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2002
Last sequence update: December 6, 2002
Last modified: January 20, 2016
This is version 86 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.