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Protein

Uncharacterized WD repeat-containing protein C18H10.05

Gene

SPBC18H10.05

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized WD repeat-containing protein C18H10.05
Gene namesi
ORF Names:SPBC18H10.05
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC18H10.05.
PomBaseiSPBC18H10.05.

Subcellular locationi

GO - Cellular componenti

  • cell division site Source: PomBase
  • cell tip Source: PomBase
  • cytosol Source: PomBase
  • nucleus Source: PomBase
  • protein complex Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003165681 – 586Uncharacterized WD repeat-containing protein C18H10.05Add BLAST586

Proteomic databases

PRIDEiO60136.

Interactioni

Protein-protein interaction databases

BioGridi277350. 29 interactors.
MINTiMINT-4677520.

Structurei

3D structure databases

ProteinModelPortaliO60136.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati184 – 223WD 1Add BLAST40
Repeati253 – 291WD 2Add BLAST39
Repeati293 – 333WD 3Add BLAST41
Repeati335 – 374WD 4Add BLAST40
Repeati387 – 430WD 5Add BLAST44
Repeati432 – 474WD 6Add BLAST43

Sequence similaritiesi

Contains 6 WD repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

InParanoidiO60136.
OrthoDBiEOG092C2ZIU.
PhylomeDBiO60136.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 2 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 5 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 2 hits.
PROSITEiPS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O60136-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVLVAETGR EDNVSVHSRE VSVNGSDSGT GNDAYKLETD DEHPPATPVR
60 70 80 90 100
GLSTRSQKRP FRPLTIQQDE DVENDTGMNT EYNDDNSSLV NTPRDSTTYA
110 120 130 140 150
ETNSPNTEKL AGRDDDRSLL NLIDRGEIDS KRQRHYVPVH CKRMPKKEIT
160 170 180 190 200
LNQKLYVSQV IGPADAPKSK TIFGKRIMQW EPSQFKESVW ASEISKSGKY
210 220 230 240 250
LATAGKDAII RVWKVIETPE RRETLLKEGP QSCGRFFTPS SIFEPEPVLE
260 270 280 290 300
CVGHNAEVLS ISWSKNDFLL TSSADRTVRL WHPKSTKSLA VFRHNEIVTC
310 320 330 340 350
VAFHPIDDRY FVSGSLDCKI QLWSILRHKI LHWTELEYVV STICFYPDGE
360 370 380 390 400
SIVVGMFYGL CAIYETKNLQ YVSSWLIHHS PSRNKKCRVT GLQCASIIPN
410 420 430 440 450
DSKSDNVVLV STNDNAIRLY NTVTHALVLK LSDAHRVNGR VLSRLSEDNS
460 470 480 490 500
YIISGSDTNE VVLWHIPNKV LINASRKRSV ILHLPTETFK VCSERLTSTI
510 520 530 540 550
IAPARTAVEA KESEHDRSLI AEGYNLVKPH SHRSYGTPPV HPIDIIIATN
560 570 580
MAGMTIVLCV DYDLGNSHHG FRNSKFGHFV KRLLRT
Length:586
Mass (Da):66,078
Last modified:August 1, 1998 - v1
Checksum:i993D5A9361AD161B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA18402.1.
PIRiT39769.
RefSeqiNP_595729.1. NM_001021627.2.

Genome annotation databases

EnsemblFungiiSPBC18H10.05.1; SPBC18H10.05.1:pep; SPBC18H10.05.
GeneIDi2540832.
KEGGispo:SPBC18H10.05.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA18402.1.
PIRiT39769.
RefSeqiNP_595729.1. NM_001021627.2.

3D structure databases

ProteinModelPortaliO60136.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi277350. 29 interactors.
MINTiMINT-4677520.

Proteomic databases

PRIDEiO60136.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC18H10.05.1; SPBC18H10.05.1:pep; SPBC18H10.05.
GeneIDi2540832.
KEGGispo:SPBC18H10.05.

Organism-specific databases

EuPathDBiFungiDB:SPBC18H10.05.
PomBaseiSPBC18H10.05.

Phylogenomic databases

InParanoidiO60136.
OrthoDBiEOG092C2ZIU.
PhylomeDBiO60136.

Miscellaneous databases

PROiO60136.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 2 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 5 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 2 hits.
PROSITEiPS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYNS5_SCHPO
AccessioniPrimary (citable) accession number: O60136
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: August 1, 1998
Last modified: October 5, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.