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Protein

Uncharacterized Rab geranylgeranyltransferase C15C4.03

Gene

SPBC15C4.03

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized Rab geranylgeranyltransferase C15C4.03
Gene namesi
ORF Names:SPBC15C4.03
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC15C4.03.
PomBaseiSPBC15C4.03.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: PomBase
  • nucleus Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 459459Uncharacterized Rab geranylgeranyltransferase C15C4.03PRO_0000317152Add
BLAST

Proteomic databases

MaxQBiO60112.

Interactioni

Protein-protein interaction databases

MINTiMINT-4677281.

Structurei

3D structure databases

ProteinModelPortaliO60112.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Rab GDI family.Curated

Phylogenomic databases

InParanoidiO60112.
OMAiWIASREF.
OrthoDBiEOG71CFW8.
PhylomeDBiO60112.

Family and domain databases

Gene3Di3.50.50.60. 2 hits.
InterProiIPR023753. FAD/NAD-binding_dom.
IPR018203. GDP_dissociation_inhibitor.
IPR017230. Rab_geranylTrfase_A_fun.
[Graphical view]
PfamiPF00996. GDI. 1 hit.
[Graphical view]
PIRSFiPIRSF037514. Rab_ger_ger_transf_A_fun. 1 hit.
PRINTSiPR00891. RABGDIREP.
PR00894. YEASTMRS6P.
SUPFAMiSSF51905. SSF51905. 1 hit.

Sequencei

Sequence statusi: Complete.

O60112-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDDPNSYDVI IVGTNLRNSI LSAALSWANQ RVLHIDENSF YGEIDGSLTL
60 70 80 90 100
RDLEQINEKI KKVDSSQILN DNGSHKSPLK RFEVQFLNKD LIPKNKGSVI
110 120 130 140 150
QFHPQEIFAS SELVKLLSET KIYKYLLLKP ARSFRLLTSN EEWIKVPESR
160 170 180 190 200
ADIFNNKNLS LASKRIVMRF MKFVSNIADE QNQNLVKEWE SKPFYKFLEE
210 220 230 240 250
VFQLSGAIEE SIIYGLCQSL SKDIPTKDAL DTVLKYFHSF GMYGDYSYLL
260 270 280 290 300
AMYGTGSELC QGFCRSSAVM GGTFMLGQAI DKIDESKIVL KDGSTLSAKK
310 320 330 340 350
IVSSVDEGKL PHQQIQQRYL LVKGDCQQLF QEDGFFAALD ASLIHFSPFS
360 370 380 390 400
ISENFGNSVQ AKLYGSGSGD CPEGYCIWYL KTLNDSPCNE VFNLATKKLC
410 420 430 440 450
SFSGCDDLEI IVQVDETLNQ LRHIDYDDTL HSAKSLFYEI LGQNNTFLQR

EGLFDEDDE
Length:459
Mass (Da):52,006
Last modified:August 1, 1998 - v1
Checksum:i0478E52B593D7D57
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA18894.1.
PIRiT39473.
RefSeqiNP_595923.1. NM_001021831.2.

Genome annotation databases

EnsemblFungiiSPBC15C4.03.1; SPBC15C4.03.1:pep; SPBC15C4.03.
GeneIDi2539612.
KEGGispo:SPBC15C4.03.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA18894.1.
PIRiT39473.
RefSeqiNP_595923.1. NM_001021831.2.

3D structure databases

ProteinModelPortaliO60112.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-4677281.

Proteomic databases

MaxQBiO60112.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC15C4.03.1; SPBC15C4.03.1:pep; SPBC15C4.03.
GeneIDi2539612.
KEGGispo:SPBC15C4.03.

Organism-specific databases

EuPathDBiFungiDB:SPBC15C4.03.
PomBaseiSPBC15C4.03.

Phylogenomic databases

InParanoidiO60112.
OMAiWIASREF.
OrthoDBiEOG71CFW8.
PhylomeDBiO60112.

Miscellaneous databases

NextBioi20800769.
PROiO60112.

Family and domain databases

Gene3Di3.50.50.60. 2 hits.
InterProiIPR023753. FAD/NAD-binding_dom.
IPR018203. GDP_dissociation_inhibitor.
IPR017230. Rab_geranylTrfase_A_fun.
[Graphical view]
PfamiPF00996. GDI. 1 hit.
[Graphical view]
PIRSFiPIRSF037514. Rab_ger_ger_transf_A_fun. 1 hit.
PRINTSiPR00891. RABGDIREP.
PR00894. YEASTMRS6P.
SUPFAMiSSF51905. SSF51905. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
    Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
    Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYG63_SCHPO
AccessioniPrimary (citable) accession number: O60112
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: August 1, 1998
Last modified: January 20, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.