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Protein

Synaptobrevin homolog ykt6

Gene

ykt6

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-SPO-204005 COPII (Coat Protein 2) Mediated Vesicle Transport
R-SPO-6807878 COPI-mediated anterograde transport

Names & Taxonomyi

Protein namesi
Recommended name:
Synaptobrevin homolog ykt6
Gene namesi
Name:ykt6
ORF Names:SPBC13G1.11
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC13G1.11
PomBaseiSPBC13G1.11 ykt6

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002067781 – 194Synaptobrevin homolog ykt6Add BLAST194
PropeptideiPRO_0000396673195 – 197Removed in mature formBy similarity3

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi193S-palmitoyl cysteineBy similarity1
Modified residuei194Cysteine methyl esterBy similarity1
Lipidationi194S-farnesyl cysteineBy similarity1

Keywords - PTMi

Lipoprotein, Methylation, Palmitate, Prenylation

Proteomic databases

MaxQBiO60073
PaxDbiO60073
PRIDEiO60073

PTM databases

iPTMnetiO60073

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi276419, 3 interactors
STRINGi4896.SPBC13G1.11.1

Structurei

3D structure databases

ProteinModelPortaliO60073
SMRiO60073
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 126LonginPROSITE-ProRule annotationAdd BLAST120
Domaini137 – 197v-SNARE coiled-coil homologyPROSITE-ProRule annotationAdd BLAST61

Sequence similaritiesi

Belongs to the synaptobrevin family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

HOGENOMiHOG000189970
InParanoidiO60073
KOiK08516
OMAiYPVRPAF
OrthoDBiEOG092C4MCV
PhylomeDBiO60073

Family and domain databases

InterProiView protein in InterPro
IPR011012 Longin-like_dom_sf
IPR010908 Longin_dom
IPR001388 Synaptobrevin
PfamiView protein in Pfam
PF13774 Longin, 1 hit
PF00957 Synaptobrevin, 1 hit
PRINTSiPR00219 SYNAPTOBREVN
SMARTiView protein in SMART
SM01270 Longin, 1 hit
SUPFAMiSSF64356 SSF64356, 1 hit
PROSITEiView protein in PROSITE
PS50859 LONGIN, 1 hit
PS00417 SYNAPTOBREVIN, 1 hit
PS50892 V_SNARE, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O60073-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLYSVSILR FDPKPVQLLC TASDLSSFSF FQRSSIGEFM NFFTKTVAER
60 70 80 90 100
TNPGQRQDVE QSNYVFHVYN RSDGLCGVIA SDKEYPLRVA YTLLNKILDE
110 120 130 140 150
FLTKNPRTKW ESGAVTLSFP ELDTYLSKYQ DPKQADTIMR VQQELDETKD
160 170 180 190
VLHKTIESVL ARGEKLDDLI QRSDNLSTQS RMFYKSAKKQ NSCCIIA
Length:197
Mass (Da):22,652
Last modified:August 1, 1998 - v1
Checksum:iED42817CF8092E5A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAA18664.1
PIRiT39412
RefSeqiNP_596561.1, NM_001022482.2

Genome annotation databases

EnsemblFungiiSPBC13G1.11.1; SPBC13G1.11.1:pep; SPBC13G1.11
GeneIDi2539873
KEGGispo:SPBC13G1.11

Similar proteinsi

Entry informationi

Entry nameiYKT6_SCHPO
AccessioniPrimary (citable) accession number: O60073
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: August 1, 1998
Last modified: April 25, 2018
This is version 116 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health