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Protein

Uncharacterized transcriptional regulatory protein C530.08

Gene

SPBC530.08

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi31 – 5727Zn(2)-C6 fungal-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized transcriptional regulatory protein C530.08
Gene namesi
ORF Names:SPBC530.08
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC530.08.
PomBaseiSPBC530.08.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei560 – 58021HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • cytosol Source: PomBase
  • integral component of membrane Source: UniProtKB-KW
  • nuclear chromatin Source: PomBase
  • nuclear membrane Source: UniProtKB-SubCell
  • nucleus Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Membrane, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 815815Uncharacterized transcriptional regulatory protein C530.08PRO_0000310391Add
BLAST

Proteomic databases

MaxQBiO59744.

Interactioni

Protein-protein interaction databases

BioGridi276790. 2 interactions.
MINTiMINT-4675841.

Structurei

3D structure databases

ProteinModelPortaliO59744.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 Zn(2)-C6 fungal-type DNA-binding domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

InParanoidiO59744.
OMAiCARSCIN.
OrthoDBiEOG7WDN9X.
PhylomeDBiO59744.

Family and domain databases

Gene3Di4.10.240.10. 1 hit.
InterProiIPR007219. Transcription_factor_dom_fun.
IPR001138. Zn2-C6_fun-type_DNA-bd.
[Graphical view]
PfamiPF04082. Fungal_trans. 1 hit.
PF00172. Zn_clus. 1 hit.
[Graphical view]
SMARTiSM00906. Fungal_trans. 1 hit.
SM00066. GAL4. 1 hit.
[Graphical view]
SUPFAMiSSF57701. SSF57701. 1 hit.
PROSITEiPS00463. ZN2_CY6_FUNGAL_1. 1 hit.
PS50048. ZN2_CY6_FUNGAL_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O59744-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDNESHSQET ESKILEGAKV ATRRRRVTRA CDMCRRKKIK CDGLRPCKNC
60 70 80 90 100
KAGKLECTYH MPSSRKSSFS PEYVENLESR VRYLETLLKK NTNFDLSSNS
110 120 130 140 150
PSFLFFLREQ KFQATNELEN MSPERKVIFT SMINYGNLFV DAKHGTRYFR
160 170 180 190 200
GGSSIHVLIQ HLIRRLPGDF EICEPYSAYP LGNKNIQFDD NDPEYQFFTP
210 220 230 240 250
TPRFSIDFMV SSVDPREIQL PGIEEALCIT KAAVSYVSGI VFYTTYADFP
260 270 280 290 300
KKIRLLYSGN YQGNFFPLFL SILCVGYYHH LLNNPSNTEL QSLIKKYSFY
310 320 330 340 350
SERLVKSADN FTIESIQCLL ILSIYRYCRT EISAAWYYMK LGLNCCLRLG
360 370 380 390 400
LHRNITEGFT EEQIDSRRRI FWAIYCYDRQ LCTLFGFPLG VRDEDIDQCL
410 420 430 440 450
PVTPKFPSVT EIEANARLFF FHGVKLYKIS SRILTKLYSP NSRNVTKKHI
460 470 480 490 500
SYAVIQDLEQ LLDGFYNSLP RVFRAEQPGE FQANHFFYNL QLVYYSFRML
510 520 530 540 550
IYRPLLHYLE ADSPAMQALK VPDRQTAFTL ACKCVDSAIV CVQNLSHLSK
560 570 580 590 600
GLKRTLDRYY WTTVYCGFST IVTLIFAALL TKNTNLLIHI SVARESIEAL
610 620 630 640 650
AHECVTRRLL PLIDKMRESL MKILESNADG YKQMSPTKAP QVFESESNVP
660 670 680 690 700
INNGPQQSID KESNSNTQLP QVETEGQQQS VFDGNIGTIP YQAYNMNEDS
710 720 730 740 750
FIDINTLSSM LNYHTQAVSI HHPSFYISRS DVPLEEEFQI PNELLAVDPV
760 770 780 790 800
AESMQENSDI INEAFGLVDP DVSDGKSRES SSLNNSTPFN PTVNIDPASI
810
LEHFSQNVMK DSQNS
Length:815
Mass (Da):93,538
Last modified:August 1, 1998 - v1
Checksum:i174A8A711C467115
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA19174.1.
PIRiT40524.
RefSeqiNP_595321.1. NM_001021228.2.

Genome annotation databases

EnsemblFungiiSPBC530.08.1; SPBC530.08.1:pep; SPBC530.08.
GeneIDi2540259.
KEGGispo:SPBC530.08.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA19174.1.
PIRiT40524.
RefSeqiNP_595321.1. NM_001021228.2.

3D structure databases

ProteinModelPortaliO59744.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi276790. 2 interactions.
MINTiMINT-4675841.

Proteomic databases

MaxQBiO59744.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC530.08.1; SPBC530.08.1:pep; SPBC530.08.
GeneIDi2540259.
KEGGispo:SPBC530.08.

Organism-specific databases

EuPathDBiFungiDB:SPBC530.08.
PomBaseiSPBC530.08.

Phylogenomic databases

InParanoidiO59744.
OMAiCARSCIN.
OrthoDBiEOG7WDN9X.
PhylomeDBiO59744.

Miscellaneous databases

PROiO59744.

Family and domain databases

Gene3Di4.10.240.10. 1 hit.
InterProiIPR007219. Transcription_factor_dom_fun.
IPR001138. Zn2-C6_fun-type_DNA-bd.
[Graphical view]
PfamiPF04082. Fungal_trans. 1 hit.
PF00172. Zn_clus. 1 hit.
[Graphical view]
SMARTiSM00906. Fungal_trans. 1 hit.
SM00066. GAL4. 1 hit.
[Graphical view]
SUPFAMiSSF57701. SSF57701. 1 hit.
PROSITEiPS00463. ZN2_CY6_FUNGAL_1. 1 hit.
PS50048. ZN2_CY6_FUNGAL_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
    Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
    Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYN28_SCHPO
AccessioniPrimary (citable) accession number: O59744
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: August 1, 1998
Last modified: June 8, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.