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Protein

Splicing factor 3B subunit 6-like protein

Gene

SPBC29A3.07c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Necessary for the splicing of pre-mRNA.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

mRNA processing, mRNA splicing

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

ReactomeiR-SPO-72165. mRNA Splicing - Minor Pathway.

Names & Taxonomyi

Protein namesi
Recommended name:
Splicing factor 3B subunit 6-like protein
Alternative name(s):
Pre-mRNA branch site p14-like protein
Gene namesi
ORF Names:SPBC29A3.07c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

PomBaseiSPBC29A3.07c.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003108091 – 115Splicing factor 3B subunit 6-like proteinAdd BLAST115

Proteomic databases

MaxQBiO59670.
PRIDEiO59670.

Interactioni

Protein-protein interaction databases

IntActiO59670. 3 interactors.

Structurei

3D structure databases

ProteinModelPortaliO59670.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 87RRMPROSITE-ProRule annotationAdd BLAST76

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni9 – 22Interaction with pre-mRNA branch siteBy similarityAdd BLAST14

Sequence similaritiesi

Contains 1 RRM (RNA recognition motif) domain.PROSITE-ProRule annotation

Phylogenomic databases

HOGENOMiHOG000276232.
InParanoidiO59670.
OrthoDBiEOG092C5A64.
PhylomeDBiO59670.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O59670-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPPSTVNQEV NSILFIKNLS FKITAEEMYD LFGRYGPVRQ IRLGNTVQTR
60 70 80 90 100
GTAFVVYENV QDARRACEKL SGYNFMDRYL VVHYYNPERA KVDGQDLAAR
110
YAALEQVKQK YGVQL
Length:115
Mass (Da):13,276
Last modified:September 22, 2009 - v2
Checksum:i75AAC211FB503AAD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA18384.2.
PIRiT40078.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA18384.2.
PIRiT40078.

3D structure databases

ProteinModelPortaliO59670.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO59670. 3 interactors.

Proteomic databases

MaxQBiO59670.
PRIDEiO59670.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

PomBaseiSPBC29A3.07c.

Phylogenomic databases

HOGENOMiHOG000276232.
InParanoidiO59670.
OrthoDBiEOG092C5A64.
PhylomeDBiO59670.

Enzyme and pathway databases

ReactomeiR-SPO-72165. mRNA Splicing - Minor Pathway.

Miscellaneous databases

PROiO59670.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSF3B6_SCHPO
AccessioniPrimary (citable) accession number: O59670
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: September 22, 2009
Last modified: October 5, 2016
This is version 115 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.