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Protein

LisH domain-containing protein C29A3.03c

Gene

SPBC29A3.03c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri341 – 385RING-type; degenerateAdd BLAST45

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
LisH domain-containing protein C29A3.03c
Gene namesi
ORF Names:SPBC29A3.03c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC29A3.03c
PomBaseiSPBC29A3.03c

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003723481 – 398LisH domain-containing protein C29A3.03cAdd BLAST398

Proteomic databases

MaxQBiO59668
PaxDbiO59668
PRIDEiO59668

Interactioni

Protein-protein interaction databases

BioGridi276993, 2 interactors
STRINGi4896.SPBC29A3.03c.1

Structurei

3D structure databases

SMRiO59668
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini99 – 131LisHPROSITE-ProRule annotationAdd BLAST33

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri341 – 385RING-type; degenerateAdd BLAST45

Keywords - Domaini

Zinc-finger

Phylogenomic databases

HOGENOMiHOG000211399
InParanoidiO59668
OMAiWVKIQKR
OrthoDBiEOG092C2RKX
PhylomeDBiO59668

Family and domain databases

CDDicd16652 dRing_Rmd5p_like, 1 hit
Gene3Di3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR013144 CRA_dom
IPR024964 CTLH/CRA
IPR006594 LisH
IPR027711 Rmd5
IPR037683 Rmd5_dRing
IPR027370 Znf-RING_LisH
IPR013083 Znf_RING/FYVE/PHD
PANTHERiPTHR12170:SF3 PTHR12170:SF3, 1 hit
PfamiView protein in Pfam
PF10607 CLTH, 1 hit
PF13445 zf-RING_UBOX, 1 hit
SMARTiView protein in SMART
SM00757 CRA, 1 hit
PROSITEiView protein in PROSITE
PS50896 LISH, 1 hit

Sequencei

Sequence statusi: Complete.

O59668-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIDEWQRIE ETAPGNKCLA KLNELESILK DAKKSCLKDP TTSMKELVAC
60 70 80 90 100
SEKTQQVFDD LKRTEKKFHT SLNRFGKTLE KKFNFDLEDI KLHSSFESKK
110 120 130 140 150
REIDTALSLH FFRQGDVELA HLFCKEAGIE EPSESLHVFT LLKSIVQGIR
160 170 180 190 200
DKDLKLPIEW ASQCRGYLER KGSSLEYTLQ KYRLVSNYLT TKDIMAAIRY
210 220 230 240 250
CRTNMAEFQK KHLADIQKTM IALFFCSRNE VLSGTNDSHD SIHHIISNNA
260 270 280 290 300
QLNIPQEYID VLDLDWKSLE LLFVREFCAA LGMSLESPLD IVVNAGAIAL
310 320 330 340 350
PILLKMSSIM KKKHTEWTSQ GELPVEIFLP SSYHFHSVFT CPVSKEQATE
360 370 380 390
ENPPMMMSCG HVIVKESLRQ LSRNGSQRFK CPYCPNENVA ADAIRVYF
Length:398
Mass (Da):45,631
Last modified:August 1, 1998 - v1
Checksum:iF090AA05A0F73F65
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAA18380.1
PIRiT40074
RefSeqiNP_595831.1, NM_001021735.2

Genome annotation databases

EnsemblFungiiSPBC29A3.03c.1; SPBC29A3.03c.1:pep; SPBC29A3.03c
GeneIDi2540465
KEGGispo:SPBC29A3.03c

Similar proteinsi

Entry informationi

Entry nameiYB83_SCHPO
AccessioniPrimary (citable) accession number: O59668
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 5, 2009
Last sequence update: August 1, 1998
Last modified: April 25, 2018
This is version 103 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names

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