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Protein

LisH domain-containing protein C29A3.03c

Gene

SPBC29A3.03c

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri341 – 38545RING-type; degenerateAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
LisH domain-containing protein C29A3.03c
Gene namesi
ORF Names:SPBC29A3.03c
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC29A3.03c.
PomBaseiSPBC29A3.03c.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: PomBase
  • GID complex Source: PomBase
  • nucleus Source: PomBase
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 398398LisH domain-containing protein C29A3.03cPRO_0000372348Add
BLAST

Proteomic databases

MaxQBiO59668.

Interactioni

Protein-protein interaction databases

BioGridi276993. 1 interaction.
MINTiMINT-4675319.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini99 – 13133LisHPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 LisH domain.PROSITE-ProRule annotation
Contains 1 RING-type zinc finger.Curated

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri341 – 38545RING-type; degenerateAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

HOGENOMiHOG000211399.
InParanoidiO59668.
OMAiWACASVE.
OrthoDBiEOG79W9FR.
PhylomeDBiO59668.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR013144. CRA_dom.
IPR024964. CTLH/CRA.
IPR006594. LisH.
IPR027711. Rmd5.
IPR027370. Znf-RING_LisH.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PANTHERiPTHR12170:SF3. PTHR12170:SF3. 2 hits.
PfamiPF10607. CLTH. 1 hit.
PF13445. zf-RING_UBOX. 1 hit.
[Graphical view]
SMARTiSM00757. CRA. 1 hit.
[Graphical view]
PROSITEiPS50896. LISH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O59668-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIDEWQRIE ETAPGNKCLA KLNELESILK DAKKSCLKDP TTSMKELVAC
60 70 80 90 100
SEKTQQVFDD LKRTEKKFHT SLNRFGKTLE KKFNFDLEDI KLHSSFESKK
110 120 130 140 150
REIDTALSLH FFRQGDVELA HLFCKEAGIE EPSESLHVFT LLKSIVQGIR
160 170 180 190 200
DKDLKLPIEW ASQCRGYLER KGSSLEYTLQ KYRLVSNYLT TKDIMAAIRY
210 220 230 240 250
CRTNMAEFQK KHLADIQKTM IALFFCSRNE VLSGTNDSHD SIHHIISNNA
260 270 280 290 300
QLNIPQEYID VLDLDWKSLE LLFVREFCAA LGMSLESPLD IVVNAGAIAL
310 320 330 340 350
PILLKMSSIM KKKHTEWTSQ GELPVEIFLP SSYHFHSVFT CPVSKEQATE
360 370 380 390
ENPPMMMSCG HVIVKESLRQ LSRNGSQRFK CPYCPNENVA ADAIRVYF
Length:398
Mass (Da):45,631
Last modified:August 1, 1998 - v1
Checksum:iF090AA05A0F73F65
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA18380.1.
PIRiT40074.
RefSeqiNP_595831.1. NM_001021735.2.

Genome annotation databases

EnsemblFungiiSPBC29A3.03c.1; SPBC29A3.03c.1:pep; SPBC29A3.03c.
GeneIDi2540465.
KEGGispo:SPBC29A3.03c.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA. Translation: CAA18380.1.
PIRiT40074.
RefSeqiNP_595831.1. NM_001021735.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi276993. 1 interaction.
MINTiMINT-4675319.

Proteomic databases

MaxQBiO59668.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiSPBC29A3.03c.1; SPBC29A3.03c.1:pep; SPBC29A3.03c.
GeneIDi2540465.
KEGGispo:SPBC29A3.03c.

Organism-specific databases

EuPathDBiFungiDB:SPBC29A3.03c.
PomBaseiSPBC29A3.03c.

Phylogenomic databases

HOGENOMiHOG000211399.
InParanoidiO59668.
OMAiWACASVE.
OrthoDBiEOG79W9FR.
PhylomeDBiO59668.

Miscellaneous databases

NextBioi20801592.
PROiO59668.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR013144. CRA_dom.
IPR024964. CTLH/CRA.
IPR006594. LisH.
IPR027711. Rmd5.
IPR027370. Znf-RING_LisH.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PANTHERiPTHR12170:SF3. PTHR12170:SF3. 2 hits.
PfamiPF10607. CLTH. 1 hit.
PF13445. zf-RING_UBOX. 1 hit.
[Graphical view]
SMARTiSM00757. CRA. 1 hit.
[Graphical view]
PROSITEiPS50896. LISH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Schizosaccharomyces pombe."
    Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A., Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S., Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M., Collins M.
    , Connor R., Cronin A., Davis P., Feltwell T., Fraser A., Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G., Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K., James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J., Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C., Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E., Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S., Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K., Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S., Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B., Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D., Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R., Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B., Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M., Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G., Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J., Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L., Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J., Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.
    Nature 415:871-880(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 972 / ATCC 24843.
  2. "ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe."
    Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S., Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S., Yoshida M.
    Nat. Biotechnol. 24:841-847(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiYB83_SCHPO
AccessioniPrimary (citable) accession number: O59668
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 5, 2009
Last sequence update: August 1, 1998
Last modified: May 11, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.