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Protein
Submitted name:

Uncharacterized protein

Gene

PH1932

Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotation

Keywords - Ligandi

DNA-bindingUniRule annotation

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-1936-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:PH1932Imported
OrganismiPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)Imported
Taxonomic identifieri70601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000752 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi70601.PH1932.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ULYX-ray2.50A1-192[»]
2CWEX-ray2.70A1-192[»]
ProteinModelPortaliO59595.
SMRiO59595. Positions 2-192.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO59595.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 9796HTH arsR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH arsR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4102TQZ. Archaea.
ENOG410XUWM. LUCA.
HOGENOMiHOG000073625.
OMAiVKRTEMK.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR001845. HTH_ArsR_DNA-bd_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01022. HTH_5. 1 hit.
[Graphical view]
PRINTSiPR00778. HTHARSR.
SMARTiSM00418. HTH_ARSR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50987. HTH_ARSR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O59595-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKKVKVITD PEVIKVMLED TRRKILKLLR NKEMTISQLS EILGKTPQTI
60 70 80 90 100
YHHIEKLKEA GLVEVKRTEM KGNLVEKYYG RTADVFYINL YLGDEELRYI
110 120 130 140 150
ARSRLKTKID IFKRLGYQFE ENELLNIMDR MSQKEFDATV RISKYIEEKE
160 170 180 190
DALKDFSNED IIHAIEWLST AELARDEEYL ELLKRLGSIL KR
Length:192
Mass (Da):22,761
Last modified:August 1, 1998 - v1
Checksum:i9D6BB1A2B1136C85
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA31059.1.
PIRiD71208.
RefSeqiWP_010885997.1. NC_000961.1.

Genome annotation databases

EnsemblBacteriaiBAA31059; BAA31059; BAA31059.
GeneIDi1442779.
KEGGipho:PH1932.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA31059.1.
PIRiD71208.
RefSeqiWP_010885997.1. NC_000961.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ULYX-ray2.50A1-192[»]
2CWEX-ray2.70A1-192[»]
ProteinModelPortaliO59595.
SMRiO59595. Positions 2-192.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi70601.PH1932.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA31059; BAA31059; BAA31059.
GeneIDi1442779.
KEGGipho:PH1932.

Phylogenomic databases

eggNOGiENOG4102TQZ. Archaea.
ENOG410XUWM. LUCA.
HOGENOMiHOG000073625.
OMAiVKRTEMK.

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-1936-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO59595.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR001845. HTH_ArsR_DNA-bd_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01022. HTH_5. 1 hit.
[Graphical view]
PRINTSiPR00778. HTHARSR.
SMARTiSM00418. HTH_ARSR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50987. HTH_ARSR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3Imported.
  2. "Crystal structure of hypothetical transcriptional regulator protein, PH1932 from Pyrococcus horikoshii OT3."
    Arai R., Kishishita S., Kukimoto-Niino M., Wang H., Sugawara M., Shirouzu M., Yokoyama S.
    Submitted (JUN-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.70 ANGSTROMS).
  3. "Crystal structure of the PH1932 protein, a unique archaeal ArsR type winged-HTH transcription factor from Pyrococcus horikoshii OT3."
    Itou H., Yao M., Watanabe N., Tanaka I.
    Proteins 70:1631-1634(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.50 ANGSTROMS).

Entry informationi

Entry nameiO59595_PYRHO
AccessioniPrimary (citable) accession number: O59595
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: August 1, 1998
Last modified: March 16, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.