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Protein

Putative HTH-type transcriptional regulatory protein PH1808

Gene

PH1808

Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi142 – 16120H-T-H motifUniRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-1805-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulatory protein PH1808UniRule annotation
Gene namesi
Ordered Locus Names:PH1808
OrganismiPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Taxonomic identifieri70601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000752 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 315315Putative HTH-type transcriptional regulatory protein PH1808PRO_0000144863Add
BLAST

Proteomic databases

PRIDEiO59472.

Interactioni

Protein-protein interaction databases

STRINGi70601.PH1808.

Structurei

3D structure databases

ProteinModelPortaliO59472.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini131 – 18959HTH cro/C1-typeUniRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH cro/C1-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04152. Archaea.
COG1395. LUCA.
HOGENOMiHOG000230106.
KOiK07728.
OMAiGVVYFRH.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
HAMAPiMF_00584. HTH_type_cro_C1. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR020886. Tscrpt_reg_HTH_Cro/C1.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O59472-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MERNELVNFV EGILKRIGFR TMKLEFRGGC FDLVATRQLL LLFIKALANI
60 70 80 90 100
DKFSEEQAED LKKLAKLFKA SPLLVGLRSK NAELEDGVVY ERFGIYAITP
110 120 130 140 150
GTLYSMFAEG EPPLIIAERG GFYVRIDGKK LKALREEHGY SITELAGILG
160 170 180 190 200
ISRKSLQRYE KGESVVSLEV ALRLEEVFDE PLVKPIDVLR ARLKDVTLTS
210 220 230 240 250
EPDNILEKEV FEKLRKLGMS VVKIKTAPFN AITKEEEDDI ELLTGIDERK
260 270 280 290 300
TGRTLKRAEL VSQMAEVVGS DGVFVVKKAR MEVVRNVPIL PKKLLEEIKD
310
ADELLELIRD LKFKS
Length:315
Mass (Da):35,657
Last modified:October 25, 2002 - v2
Checksum:i2FC9342421984443
GO

Sequence cautioni

The sequence BAA30927 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30927.1. Different initiation.
PIRiH71191.
RefSeqiWP_048053613.1. NC_000961.1.

Genome annotation databases

EnsemblBacteriaiBAA30927; BAA30927; BAA30927.
GeneIDi1442650.
KEGGipho:PH1808.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30927.1. Different initiation.
PIRiH71191.
RefSeqiWP_048053613.1. NC_000961.1.

3D structure databases

ProteinModelPortaliO59472.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi70601.PH1808.

Proteomic databases

PRIDEiO59472.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA30927; BAA30927; BAA30927.
GeneIDi1442650.
KEGGipho:PH1808.

Phylogenomic databases

eggNOGiarCOG04152. Archaea.
COG1395. LUCA.
HOGENOMiHOG000230106.
KOiK07728.
OMAiGVVYFRH.

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-1805-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
HAMAPiMF_00584. HTH_type_cro_C1. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR020886. Tscrpt_reg_HTH_Cro/C1.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY1808_PYRHO
AccessioniPrimary (citable) accession number: O59472
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 25, 2002
Last sequence update: October 25, 2002
Last modified: November 11, 2015
This is version 89 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.