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Protein

30S ribosomal protein S4e

Gene

rps4e

Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S4e
Gene namesi
Name:rps4e
Ordered Locus Names:PH1766
OrganismiPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Taxonomic identifieri70601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000752 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001308601 – 24330S ribosomal protein S4eAdd BLAST243

Interactioni

Protein-protein interaction databases

STRINGi70601.PH1766.

Structurei

3D structure databases

SMRiO59430.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini43 – 105S4 RNA-bindingAdd BLAST63

Sequence similaritiesi

Phylogenomic databases

eggNOGiarCOG04093. Archaea.
COG1471. LUCA.
HOGENOMiHOG000231324.
KOiK02987.
OMAiRKDYKFP.
OrthoDBiPOG093Z0C23.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
HAMAPiMF_00485. Ribosomal_S4e. 1 hit.
InterProiView protein in InterPro
IPR005824. KOW.
IPR000876. Ribosomal_S4e.
IPR013845. Ribosomal_S4e_central_region.
IPR013843. Ribosomal_S4e_N.
IPR018199. Ribosomal_S4e_N_CS.
IPR002942. S4_RNA-bd.
PANTHERiPTHR11581. PTHR11581. 1 hit.
PfamiView protein in Pfam
PF00900. Ribosomal_S4e. 1 hit.
PF08071. RS4NT. 1 hit.
PF01479. S4. 1 hit.
PIRSFiPIRSF002116. Ribosomal_S4. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002667. Ribosomal_S4e_central. 1 hit.
SMARTiView protein in SMART
SM00739. KOW. 1 hit.
SM00363. S4. 1 hit.
PROSITEiView protein in PROSITE
PS00528. RIBOSOMAL_S4E. 1 hit.
PS50889. S4. 1 hit.

Sequencei

Sequence statusi: Complete.

O59430-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARKGPKRHL KRLAAPSSWY IERKAYKWAV RPRPGPHNMR TSIPLLYIVR
60 70 80 90 100
DYLGYAKTAR EARKILNEGK FLVDGKVRKD YKFPVGIMDV VSIPETGEHY
110 120 130 140 150
RVLPNRIGKL VLHPISEEEA NIKPLRIRNK RMVKGAKVQL NFHDGTNHLI
160 170 180 190 200
PLTEKDNYFT SYTVLMKVPE REIMEVLPFE KGAYVFVTQG KNVARKGRIV
210 220 230 240
EIKKFPMGWP DVVTIEDEEG ELFDTLKEYA FVVGKDKPKI SLP
Length:243
Mass (Da):28,100
Last modified:August 1, 1998 - v1
Checksum:i67AACEE8846AF35F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30881.1.
PIRiB71186.
RefSeqiWP_010885828.1. NC_000961.1.

Genome annotation databases

EnsemblBacteriaiBAA30881; BAA30881; BAA30881.
GeneIDi1442610.
KEGGipho:PH1766.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS4E_PYRHO
AccessioniPrimary (citable) accession number: O59430
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: August 1, 1998
Last modified: June 7, 2017
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families