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Protein

30S ribosomal protein S17P

Gene

rps17p

Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S17PUniRule annotation
Gene namesi
Name:rps17pUniRule annotation
Ordered Locus Names:PH1770
OrganismiPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Taxonomic identifieri70601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000752 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001285031 – 11630S ribosomal protein S17PAdd BLAST116

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi70601.PH1770.

Structurei

3D structure databases

ProteinModelPortaliO59426.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S17P family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04096. Archaea.
COG0186. LUCA.
HOGENOMiHOG000231341.
KOiK02961.
OMAiTKHFVVV.

Family and domain databases

HAMAPiMF_01345_A. Ribosomal_S17_A. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17/S11.
IPR028333. Ribosomal_S17_arc-typ.
IPR019978. Ribosomal_S17_archaeal.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiPF00366. Ribosomal_S17. 1 hit.
[Graphical view]
PRINTSiPR00973. RIBOSOMALS17.
ProDomiPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03630. uS17_arch. 1 hit.
PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O59426-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEKMVRDIGL RIQPPAEKCD DPKCPWHGHL KIHGRVFEGI VISDKPRKTV
60 70 80 90 100
TVERQYYHYL KKYERYELRR SRIHAHNPPC INAKVGDRVL IAETRPLSKT
110
KHFVVVAVLE RAEERR
Length:116
Mass (Da):13,736
Last modified:August 1, 1998 - v1
Checksum:iD0FC4B442DA903E8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30885.1.
PIRiF71186.

Genome annotation databases

EnsemblBacteriaiBAA30885; BAA30885; BAA30885.
KEGGipho:PH1770.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30885.1.
PIRiF71186.

3D structure databases

ProteinModelPortaliO59426.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi70601.PH1770.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA30885; BAA30885; BAA30885.
KEGGipho:PH1770.

Phylogenomic databases

eggNOGiarCOG04096. Archaea.
COG0186. LUCA.
HOGENOMiHOG000231341.
KOiK02961.
OMAiTKHFVVV.

Family and domain databases

HAMAPiMF_01345_A. Ribosomal_S17_A. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17/S11.
IPR028333. Ribosomal_S17_arc-typ.
IPR019978. Ribosomal_S17_archaeal.
IPR019979. Ribosomal_S17_CS.
[Graphical view]
PANTHERiPTHR10744. PTHR10744. 1 hit.
PfamiPF00366. Ribosomal_S17. 1 hit.
[Graphical view]
PRINTSiPR00973. RIBOSOMALS17.
ProDomiPD001295. Ribosomal_S17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03630. uS17_arch. 1 hit.
PROSITEiPS00056. RIBOSOMAL_S17. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS17_PYRHO
AccessioniPrimary (citable) accession number: O59426
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: August 1, 1998
Last modified: November 30, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.