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Protein

Ribosome maturation protein SDO1 homolog

Gene

PH1552

Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-1558-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation protein SDO1 homolog
Gene namesi
Ordered Locus Names:PH1552
OrganismiPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Taxonomic identifieri70601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000752 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001237721 – 236Ribosome maturation protein SDO1 homologAdd BLAST236

Proteomic databases

PRIDEiO59220.

Interactioni

Protein-protein interaction databases

STRINGi70601.PH1552.

Structurei

3D structure databases

ProteinModelPortaliO59220.
SMRiO59220.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the SDO1/SBDS family.Curated

Phylogenomic databases

eggNOGiarCOG04187. Archaea.
COG1500. LUCA.
HOGENOMiHOG000229540.
KOiK14574.
OMAiAVNPQMD.
OrthoDBiPOG093Z0971.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiView protein in InterPro
IPR035647. EFG_III/V.
IPR018978. Ribosome_mat_SBDS_C.
IPR018023. Ribosome_mat_SBDS_CS.
IPR019783. Ribosome_mat_SBDS_N.
IPR036786. Ribosome_mat_SBDS_N_sf.
IPR002140. Sdo1/SBDS.
IPR037188. Sdo1/SBDS_central_sf.
PANTHERiPTHR10927:SF1. PTHR10927:SF1. 1 hit.
PfamiView protein in Pfam
PF01172. SBDS. 1 hit.
PF09377. SBDS_C. 1 hit.
SUPFAMiSSF109728. SSF109728. 1 hit.
SSF54980. SSF54980. 1 hit.
SSF89895. SSF89895. 1 hit.
TIGRFAMsiTIGR00291. RNA_SBDS. 1 hit.
PROSITEiView protein in PROSITE
PS01267. UPF0023. 1 hit.

Sequencei

Sequence statusi: Complete.

O59220-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPISVDKAVI ARLKIQGETF EILVDPYLAR DFKEGKNVPI EEILATPYVF
60 70 80 90 100
KDAHKGDKAS EKEMEKIFGT SDPYEVAKII LKKGEVQLTA QQRREMLEEK
110 120 130 140 150
KRQIATIIHK HAVDPRTGYP HPVDRILRAM EEVGVRVDIF KDAEAQVQDV
160 170 180 190 200
IKALRRVLPL RIEMKVIAVK IPGEYVGRSY GEVRKFGRIK KEEWGSDGSW
210 220 230
MFLIEIPGGV EEEFYEKLNA LTKGNAQTKL IERKGL
Length:236
Mass (Da):26,972
Last modified:August 1, 1998 - v1
Checksum:i0ED96034B5BD6B90
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30664.1.
PIRiH71032.
RefSeqiWP_010885631.1. NC_000961.1.

Genome annotation databases

EnsemblBacteriaiBAA30664; BAA30664; BAA30664.
GeneIDi1443871.
KEGGipho:PH1552.

Similar proteinsi

Entry informationi

Entry nameiSDO1_PYRHO
AccessioniPrimary (citable) accession number: O59220
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: August 1, 1998
Last modified: October 25, 2017
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families