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Protein

Ribosome maturation protein SDO1 homolog

Gene

PH1552

Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-1559-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation protein SDO1 homolog
Gene namesi
Ordered Locus Names:PH1552
OrganismiPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Taxonomic identifieri70601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000752 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 236236Ribosome maturation protein SDO1 homologPRO_0000123772Add
BLAST

Proteomic databases

PRIDEiO59220.

Interactioni

Protein-protein interaction databases

STRINGi70601.PH1552.

Structurei

3D structure databases

ProteinModelPortaliO59220.
SMRiO59220. Positions 3-235.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the SDO1/SBDS family.Curated

Phylogenomic databases

eggNOGiarCOG04187. Archaea.
COG1500. LUCA.
HOGENOMiHOG000229540.
KOiK14574.
OMAiAVNPQMD.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR018978. Ribosome_mat_SBDS_C.
IPR018023. Ribosome_mat_SBDS_CS.
IPR019783. Ribosome_mat_SBDS_N.
IPR002140. Sdo1/SBDS.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
PF09377. SBDS_C. 1 hit.
[Graphical view]
SUPFAMiSSF54980. SSF54980. 1 hit.
SSF89895. SSF89895. 1 hit.
TIGRFAMsiTIGR00291. RNA_SBDS. 1 hit.
PROSITEiPS01267. UPF0023. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O59220-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPISVDKAVI ARLKIQGETF EILVDPYLAR DFKEGKNVPI EEILATPYVF
60 70 80 90 100
KDAHKGDKAS EKEMEKIFGT SDPYEVAKII LKKGEVQLTA QQRREMLEEK
110 120 130 140 150
KRQIATIIHK HAVDPRTGYP HPVDRILRAM EEVGVRVDIF KDAEAQVQDV
160 170 180 190 200
IKALRRVLPL RIEMKVIAVK IPGEYVGRSY GEVRKFGRIK KEEWGSDGSW
210 220 230
MFLIEIPGGV EEEFYEKLNA LTKGNAQTKL IERKGL
Length:236
Mass (Da):26,972
Last modified:August 1, 1998 - v1
Checksum:i0ED96034B5BD6B90
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30664.1.
PIRiH71032.
RefSeqiWP_010885631.1. NC_000961.1.

Genome annotation databases

EnsemblBacteriaiBAA30664; BAA30664; BAA30664.
GeneIDi1443871.
KEGGipho:PH1552.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30664.1.
PIRiH71032.
RefSeqiWP_010885631.1. NC_000961.1.

3D structure databases

ProteinModelPortaliO59220.
SMRiO59220. Positions 3-235.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi70601.PH1552.

Proteomic databases

PRIDEiO59220.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA30664; BAA30664; BAA30664.
GeneIDi1443871.
KEGGipho:PH1552.

Phylogenomic databases

eggNOGiarCOG04187. Archaea.
COG1500. LUCA.
HOGENOMiHOG000229540.
KOiK14574.
OMAiAVNPQMD.

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-1559-MONOMER.

Family and domain databases

Gene3Di3.30.1250.10. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR018978. Ribosome_mat_SBDS_C.
IPR018023. Ribosome_mat_SBDS_CS.
IPR019783. Ribosome_mat_SBDS_N.
IPR002140. Sdo1/SBDS.
[Graphical view]
PfamiPF01172. SBDS. 1 hit.
PF09377. SBDS_C. 1 hit.
[Graphical view]
SUPFAMiSSF54980. SSF54980. 1 hit.
SSF89895. SSF89895. 1 hit.
TIGRFAMsiTIGR00291. RNA_SBDS. 1 hit.
PROSITEiPS01267. UPF0023. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3.

Entry informationi

Entry nameiSDO1_PYRHO
AccessioniPrimary (citable) accession number: O59220
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: August 1, 1998
Last modified: January 20, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.