Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0310 protein PH1033

Gene

PH1033

Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-1027-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0310 protein PH1033UniRule annotation
Gene namesi
Ordered Locus Names:PH1033
OrganismiPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Taxonomic identifieri70601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000752 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 145145UPF0310 protein PH1033PRO_0000059638Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi70601.PH1033.

Structurei

Secondary structure

1
145
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 86Combined sources
Helixi10 – 1910Combined sources
Beta strandi21 – 244Combined sources
Helixi26 – 283Combined sources
Helixi29 – 324Combined sources
Beta strandi40 – 456Combined sources
Beta strandi59 – 668Combined sources
Beta strandi90 – 10415Combined sources
Helixi105 – 1106Combined sources
Helixi120 – 1234Combined sources
Turni124 – 1263Combined sources
Beta strandi128 – 1325Combined sources
Helixi134 – 14310Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1WMMX-ray2.20A1-145[»]
2HD9X-ray1.35A1-145[»]
2ZBNX-ray2.00A1-145[»]
ProteinModelPortaliO58764.
SMRiO58764. Positions 1-145.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO58764.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0310 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG02727. Archaea.
COG1673. LUCA.
HOGENOMiHOG000244906.
OMAiEKNVWGV.

Family and domain databases

Gene3Di3.10.590.10. 1 hit.
HAMAPiMF_00771. UPF0310.
InterProiIPR002740. EVE_domain.
IPR015947. PUA-like_domain.
IPR022996. UPF0310.
[Graphical view]
PfamiPF01878. EVE. 1 hit.
[Graphical view]
SUPFAMiSSF88697. SSF88697. 1 hit.

Sequencei

Sequence statusi: Complete.

O58764-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTYWICITNR ENWEVIKRHN VWGVPKKHKN TLSRVKPGDK LVIYVRQEKD
60 70 80 90 100
KEGNLLEPKI VGIYEVTSEP YVDFSRIFKP HRGGKETYPY RVKIKPIKIG
110 120 130 140
EINFKPLIND LKFIKNKKRW SMHFFGKAMR ELPEEDYKLI EKLLL
Length:145
Mass (Da):17,430
Last modified:August 1, 1998 - v1
Checksum:i5552260A2498A7AB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30131.1.
PIRiE71096.
RefSeqiWP_010885121.1. NC_000961.1.

Genome annotation databases

EnsemblBacteriaiBAA30131; BAA30131; BAA30131.
GeneIDi1443356.
KEGGipho:PH1033.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30131.1.
PIRiE71096.
RefSeqiWP_010885121.1. NC_000961.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1WMMX-ray2.20A1-145[»]
2HD9X-ray1.35A1-145[»]
2ZBNX-ray2.00A1-145[»]
ProteinModelPortaliO58764.
SMRiO58764. Positions 1-145.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi70601.PH1033.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA30131; BAA30131; BAA30131.
GeneIDi1443356.
KEGGipho:PH1033.

Phylogenomic databases

eggNOGiarCOG02727. Archaea.
COG1673. LUCA.
HOGENOMiHOG000244906.
OMAiEKNVWGV.

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-1027-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO58764.

Family and domain databases

Gene3Di3.10.590.10. 1 hit.
HAMAPiMF_00771. UPF0310.
InterProiIPR002740. EVE_domain.
IPR015947. PUA-like_domain.
IPR022996. UPF0310.
[Graphical view]
PfamiPF01878. EVE. 1 hit.
[Graphical view]
SUPFAMiSSF88697. SSF88697. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3.
  2. "Crystal structure of PH1033 from Pyrococcus horikoshii OT3."
    RIKEN structural genomics initiative (RSGI)
    Submitted (AUG-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS).

Entry informationi

Entry nameiY1033_PYRHO
AccessioniPrimary (citable) accession number: O58764
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2004
Last sequence update: August 1, 1998
Last modified: December 9, 2015
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.