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Protein

UPF0271 protein PH0986

Gene

PH0986

Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-981-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0271 protein PH0986UniRule annotation
Gene namesi
Ordered Locus Names:PH0986
OrganismiPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Taxonomic identifieri70601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000752 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 255255UPF0271 protein PH0986PRO_0000185066Add
BLAST

Interactioni

Protein-protein interaction databases

MINTiMINT-1501251.
STRINGi70601.PH0986.

Structurei

Secondary structure

1
255
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 98Combined sources
Helixi21 – 244Combined sources
Turni25 – 273Combined sources
Beta strandi29 – 346Combined sources
Beta strandi36 – 394Combined sources
Helixi42 – 5413Combined sources
Beta strandi58 – 625Combined sources
Turni68 – 725Combined sources
Helixi80 – 10021Combined sources
Beta strandi105 – 1084Combined sources
Helixi112 – 1209Combined sources
Helixi122 – 13514Combined sources
Beta strandi140 – 1445Combined sources
Helixi148 – 1569Combined sources
Beta strandi160 – 1645Combined sources
Beta strandi168 – 1703Combined sources
Beta strandi176 – 1783Combined sources
Helixi189 – 20214Combined sources
Beta strandi203 – 2064Combined sources
Beta strandi212 – 2143Combined sources
Beta strandi218 – 2214Combined sources
Helixi227 – 24216Combined sources
Helixi250 – 2523Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1V6TX-ray1.70A1-255[»]
ProteinModelPortaliO58714.
SMRiO58714. Positions 1-254.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO58714.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0271 (lamB) family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG05810. Archaea.
COG1540. LUCA.
HOGENOMiHOG000237330.
KOiK07160.
OMAiAQVGYRD.

Family and domain databases

HAMAPiMF_00691. UPF0271.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR005501. UPF0271_LamB_YcsF.
[Graphical view]
PfamiPF03746. LamB_YcsF. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.

Sequencei

Sequence statusi: Complete.

O58714-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVDLNSDLG ESFGRYKLGL DEEVMKYITS ANVACGWHAG DPLVMRKTVR
60 70 80 90 100
LAKENDVQVG AHPGYPDLMG FGRRYMKLTP EEARNYILYQ VGALYAFAKA
110 120 130 140 150
EGLELQHVKP HGALYNAMVK EEDLARAVIE GILDFDKDLI LVTLSNSRVA
160 170 180 190 200
DIAEEMGLKV AHEVFADRAY NPDGTLVPRG RPGAVIEDKE EIAERVISMV
210 220 230 240 250
KDGGIRAING EWVDLKVDTI CVHGDNPKAV EITSYIRKVL EEEGVKIVPM

KEFIR
Length:255
Mass (Da):28,431
Last modified:August 1, 1998 - v1
Checksum:i1536EF00FDFA09B1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30083.1.
PIRiE71090.
RefSeqiWP_010885076.1. NC_000961.1.

Genome annotation databases

EnsemblBacteriaiBAA30083; BAA30083; BAA30083.
GeneIDi1443311.
KEGGipho:PH0986.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30083.1.
PIRiE71090.
RefSeqiWP_010885076.1. NC_000961.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1V6TX-ray1.70A1-255[»]
ProteinModelPortaliO58714.
SMRiO58714. Positions 1-254.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-1501251.
STRINGi70601.PH0986.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA30083; BAA30083; BAA30083.
GeneIDi1443311.
KEGGipho:PH0986.

Phylogenomic databases

eggNOGiarCOG05810. Archaea.
COG1540. LUCA.
HOGENOMiHOG000237330.
KOiK07160.
OMAiAQVGYRD.

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-981-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO58714.

Family and domain databases

HAMAPiMF_00691. UPF0271.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR005501. UPF0271_LamB_YcsF.
[Graphical view]
PfamiPF03746. LamB_YcsF. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3.
  2. "Crystal structure of lactam utilization protein from Pyrococcus horikoshii OT3."
    RIKEN structural genomics initiative (RSGI)
    Submitted (DEC-2004) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.7 ANGSTROMS).

Entry informationi

Entry nameiY986_PYRHO
AccessioniPrimary (citable) accession number: O58714
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 4, 2003
Last sequence update: August 1, 1998
Last modified: December 9, 2015
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.