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Protein

UPF0271 protein PH0986

Gene

PH0986

Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-980-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0271 protein PH0986UniRule annotation
Gene namesi
Ordered Locus Names:PH0986
OrganismiPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Taxonomic identifieri70601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000752 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001850661 – 255UPF0271 protein PH0986Add BLAST255

Interactioni

Protein-protein interaction databases

MINTiMINT-1501251.
STRINGi70601.PH0986.

Structurei

Secondary structure

1255
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 9Combined sources8
Helixi21 – 24Combined sources4
Turni25 – 27Combined sources3
Beta strandi29 – 34Combined sources6
Beta strandi36 – 39Combined sources4
Helixi42 – 54Combined sources13
Beta strandi58 – 62Combined sources5
Turni68 – 72Combined sources5
Helixi80 – 100Combined sources21
Beta strandi105 – 108Combined sources4
Helixi112 – 120Combined sources9
Helixi122 – 135Combined sources14
Beta strandi140 – 144Combined sources5
Helixi148 – 156Combined sources9
Beta strandi160 – 164Combined sources5
Beta strandi168 – 170Combined sources3
Beta strandi176 – 178Combined sources3
Helixi189 – 202Combined sources14
Beta strandi203 – 206Combined sources4
Beta strandi212 – 214Combined sources3
Beta strandi218 – 221Combined sources4
Helixi227 – 242Combined sources16
Helixi250 – 252Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1V6TX-ray1.70A1-255[»]
ProteinModelPortaliO58714.
SMRiO58714.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO58714.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0271 (lamB) family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG05810. Archaea.
COG1540. LUCA.
HOGENOMiHOG000237330.
KOiK07160.
OMAiAQVGYRD.

Family and domain databases

HAMAPiMF_00691. UPF0271. 1 hit.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR005501. UPF0271_LamB_YcsF.
[Graphical view]
PfamiPF03746. LamB_YcsF. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.

Sequencei

Sequence statusi: Complete.

O58714-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVDLNSDLG ESFGRYKLGL DEEVMKYITS ANVACGWHAG DPLVMRKTVR
60 70 80 90 100
LAKENDVQVG AHPGYPDLMG FGRRYMKLTP EEARNYILYQ VGALYAFAKA
110 120 130 140 150
EGLELQHVKP HGALYNAMVK EEDLARAVIE GILDFDKDLI LVTLSNSRVA
160 170 180 190 200
DIAEEMGLKV AHEVFADRAY NPDGTLVPRG RPGAVIEDKE EIAERVISMV
210 220 230 240 250
KDGGIRAING EWVDLKVDTI CVHGDNPKAV EITSYIRKVL EEEGVKIVPM

KEFIR
Length:255
Mass (Da):28,431
Last modified:August 1, 1998 - v1
Checksum:i1536EF00FDFA09B1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30083.1.
PIRiE71090.
RefSeqiWP_010885076.1. NC_000961.1.

Genome annotation databases

EnsemblBacteriaiBAA30083; BAA30083; BAA30083.
GeneIDi1443311.
KEGGipho:PH0986.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA30083.1.
PIRiE71090.
RefSeqiWP_010885076.1. NC_000961.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1V6TX-ray1.70A1-255[»]
ProteinModelPortaliO58714.
SMRiO58714.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-1501251.
STRINGi70601.PH0986.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA30083; BAA30083; BAA30083.
GeneIDi1443311.
KEGGipho:PH0986.

Phylogenomic databases

eggNOGiarCOG05810. Archaea.
COG1540. LUCA.
HOGENOMiHOG000237330.
KOiK07160.
OMAiAQVGYRD.

Enzyme and pathway databases

BioCyciPHOR70601:GJWR-980-MONOMER.

Miscellaneous databases

EvolutionaryTraceiO58714.

Family and domain databases

HAMAPiMF_00691. UPF0271. 1 hit.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR005501. UPF0271_LamB_YcsF.
[Graphical view]
PfamiPF03746. LamB_YcsF. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY986_PYRHO
AccessioniPrimary (citable) accession number: O58714
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 4, 2003
Last sequence update: August 1, 1998
Last modified: November 2, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.