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Protein

RutC family protein PH0854

Gene

PH0854

Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
RutC family protein PH0854
Gene namesi
Ordered Locus Names:PH0854
ORF Names:PHAL028
OrganismiPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Taxonomic identifieri70601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000752 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001703441 – 126RutC family protein PH0854Add BLAST126

Interactioni

Protein-protein interaction databases

STRINGi70601.PH0854.

Structurei

Secondary structure

1126
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 5Combined sources4
Beta strandi18 – 23Combined sources6
Beta strandi26 – 32Combined sources7
Turni37 – 39Combined sources3
Beta strandi44 – 46Combined sources3
Helixi47 – 64Combined sources18
Helixi69 – 71Combined sources3
Beta strandi72 – 79Combined sources8
Helixi87 – 96Combined sources10
Turni97 – 99Combined sources3
Beta strandi102 – 107Combined sources6
Helixi112 – 114Combined sources3
Beta strandi116 – 124Combined sources9

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2DYYX-ray2.60A/B/C/D/E/F/G/H/I/J/K/L1-126[»]
ProteinModelPortaliO58584.
SMRiO58584.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO58584.

Family & Domainsi

Sequence similaritiesi

Belongs to the RutC family.Curated

Phylogenomic databases

eggNOGiarCOG01630. Archaea.
COG0251. LUCA.
HOGENOMiHOG000267215.
KOiK09022.
OMAiGSYFKEP.

Family and domain databases

Gene3Di3.30.1330.40. 1 hit.
InterProiIPR013813. Endoribo_LPSP/chorism_mut-like.
IPR006056. RidA.
IPR019897. RidA_CS.
IPR006175. YjgF/YER057c/UK114.
[Graphical view]
PANTHERiPTHR11803. PTHR11803. 1 hit.
PfamiPF01042. Ribonuc_L-PSP. 1 hit.
[Graphical view]
SUPFAMiSSF55298. SSF55298. 1 hit.
TIGRFAMsiTIGR00004. TIGR00004. 1 hit.
PROSITEiPS01094. UPF0076. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O58584-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEVIFTENA PKPIGPYSQA IKAGNFLFIA GQIPIDPKTG EIVKGDIKDQ
60 70 80 90 100
TRQVLENIKA ILEAAGYSLN DVIKVTVYLK DMNDFAKMNE VYAEYFGESK
110 120
PARVAVEVSR LPKDVLIEIE AIAYKE
Length:126
Mass (Da):14,036
Last modified:May 27, 2002 - v2
Checksum:iFA8EFE12C90F0C49
GO

Sequence cautioni

The sequence BAA29948 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA29948.1. Different initiation.
PIRiB71136.
RefSeqiWP_048053242.1. NC_000961.1.

Genome annotation databases

EnsemblBacteriaiBAA29948; BAA29948; BAA29948.
GeneIDi1443181.
KEGGipho:PH0854.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000001 Genomic DNA. Translation: BAA29948.1. Different initiation.
PIRiB71136.
RefSeqiWP_048053242.1. NC_000961.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2DYYX-ray2.60A/B/C/D/E/F/G/H/I/J/K/L1-126[»]
ProteinModelPortaliO58584.
SMRiO58584.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi70601.PH0854.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA29948; BAA29948; BAA29948.
GeneIDi1443181.
KEGGipho:PH0854.

Phylogenomic databases

eggNOGiarCOG01630. Archaea.
COG0251. LUCA.
HOGENOMiHOG000267215.
KOiK09022.
OMAiGSYFKEP.

Miscellaneous databases

EvolutionaryTraceiO58584.

Family and domain databases

Gene3Di3.30.1330.40. 1 hit.
InterProiIPR013813. Endoribo_LPSP/chorism_mut-like.
IPR006056. RidA.
IPR019897. RidA_CS.
IPR006175. YjgF/YER057c/UK114.
[Graphical view]
PANTHERiPTHR11803. PTHR11803. 1 hit.
PfamiPF01042. Ribonuc_L-PSP. 1 hit.
[Graphical view]
SUPFAMiSSF55298. SSF55298. 1 hit.
TIGRFAMsiTIGR00004. TIGR00004. 1 hit.
PROSITEiPS01094. UPF0076. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY854_PYRHO
AccessioniPrimary (citable) accession number: O58584
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: May 27, 2002
Last modified: November 2, 2016
This is version 99 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.