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Reviewed, UniProtKB/Swiss-Prot O58316 (NIKR_PYRHO)

Last modified November 3, 2009. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Putative nickel-responsive regulator
Gene names
Ordered Locus Names: PH0601
OrganismPyrococcus horikoshii [Complete proteome] [HAMAP]
Taxonomic identifier53953 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus

Protein attributes

Sequence length138 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Transcriptional regulator Potential.

Cofactor

Binds 1 nickel ion per subunit By similarity.

Sequence similarities

Belongs to the transcriptional regulatory copG/nikR family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 138138Putative nickel-responsive regulator HAMAP MF_00476
PRO_0000139312

Sites

Metal binding781Nickel By similarity
Metal binding891Nickel By similarity
Metal binding911Nickel By similarity
Metal binding971Nickel By similarity

Secondary structure

.................. 138
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
O58316-1 [UniParc].

Last modified August 1, 1998. Version 1.
Checksum: A4B8715636C019FE

FASTA13815,806
        10         20         30         40         50         60 
MELIRFSISI PSKLLEKFDQ IIEEIGYENR SEAIRDLIRD FIIRHEWEVG NEEVAGTITI 

        70         80         90        100        110        120 
VYNHDEGDVV KALLDLQHEY LDEIISSLHV HMDEHNCLEV IVVKGEAKKI KMIADKLLSL 

       130 
KGVKHGKLVM TSTGKELV 

« Hide

References

Cross-references

Sequence databases

BA000001 Genomic DNA. Translation: BAA29690.1.
PIRE71175.
RefSeqNP_142565.1.

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
2BJ1X-ray3.00A/B1-138[»]
2BJ3X-ray2.20A/B/C/D1-138[»]
2BJ7X-ray2.10A/B1-138[»]
2BJ8X-ray2.10A/B1-138[»]
2BJ9X-ray3.00A/B1-138[»]
ModBaseSearch...

Genome annotation databases

GeneID1442936.
GenomeReviewsGene locus PH0601 in contig BA000001_GR.
KEGGpho:PH0601.
NMPDRfig|70601.1.peg.589.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMO58316.
OMADEHNCLE.

Family and domain databases

HAMAPMF_00476.
[Tree]
InterProIPR013321. Arc_rbn_hlx_hlx.
IPR002145. CopG_DNA_bd.
IPR014864. TF_NikR_Ni-bd_C.
[Graphical view]
Gene3DG3DSA:1.10.1220.10. Arc_rbn_hlx_hlx. 1 hit.
G3DSA:3.30.70.1150. NikR_bd_C. 1 hit.
PfamPF08753. NikR_C. 1 hit.
PF01402. RHH_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameNIKR_PYRHO
AccessionPrimary (citable) accession number: O58316
Entry history
Integrated into UniProtKB/Swiss-Prot: November 2, 2001
Last sequence update: August 1, 1998
Last modified: November 3, 2009
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents