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O58316 (NIKR_PYRHO) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative nickel-responsive regulator
Gene names
Ordered Locus Names:PH0601
OrganismPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) [Complete proteome] [HAMAP]
Taxonomic identifier70601 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus

Protein attributes

Sequence length138 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Transcriptional regulator Potential. HAMAP MF_00476

Cofactor

Binds 1 nickel ion per subunit By similarity. HAMAP MF_00476

Sequence similarities

Belongs to the transcriptional regulatory CopG/NikR family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 138138Putative nickel-responsive regulator HAMAP MF_00476
PRO_0000139312

Sites

Metal binding781Nickel By similarity
Metal binding891Nickel By similarity
Metal binding911Nickel By similarity
Metal binding971Nickel By similarity

Secondary structure

.................. 138
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
O58316 [UniParc].

Last modified August 1, 1998. Version 1.
Checksum: A4B8715636C019FE

FASTA13815,806
        10         20         30         40         50         60 
MELIRFSISI PSKLLEKFDQ IIEEIGYENR SEAIRDLIRD FIIRHEWEVG NEEVAGTITI 

        70         80         90        100        110        120 
VYNHDEGDVV KALLDLQHEY LDEIISSLHV HMDEHNCLEV IVVKGEAKKI KMIADKLLSL 

       130 
KGVKHGKLVM TSTGKELV 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000001 Genomic DNA. Translation: BAA29690.1.
PIRE71175.
RefSeqNP_142565.1. NC_000961.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2BJ1X-ray3.00A/B1-138[»]
2BJ3X-ray2.20A/B/C/D1-138[»]
2BJ7X-ray2.10A/B1-138[»]
2BJ8X-ray2.10A/B1-138[»]
2BJ9X-ray3.00A/B1-138[»]
ProteinModelPortalO58316.
SMRO58316. Positions 1-138.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBPYRT00000001654; EBPYRP00000001654; EBPYRG00000001654.
GeneID1442936.
GenomeReviewsGene locus PH0601 in contig BA000001_GR.
KEGGpho:PH0601.
NMPDRfig|70601.1.peg.589.

Organism-specific databases

CMRSearch...

Phylogenomic databases

GeneTreeEBGT00050000022529.
HOGENOMHBG646378.
OMADEHNCLE.
PhylomeDBO58316.
ProtClustDBPRK04460.

Enzyme and pathway databases

BioCycPHOR70601:PH0601-MONOMER.

Family and domain databases

HAMAPMF_00476. NikR.
[Tree]
InterProIPR013321. Arc_rbn_hlx_hlx.
IPR002145. CopG_DNA-bd.
IPR022988. Ni_resp_reg_NikR.
IPR010985. Ribbon_hlx_hlx.
IPR014864. TF_NikR_Ni-bd_C.
[Graphical view]
Gene3DG3DSA:1.10.1220.10. Arc_rbn_hlx_hlx. 1 hit.
G3DSA:3.30.70.1150. NikR_bd_C. 1 hit.
KOK07722.
PfamPF08753. NikR_C. 1 hit.
PF01402. RHH_1. 1 hit.
[Graphical view]
SUPFAMSSF47598. Met_repress_like. 1 hit.
ProtoNetSearch...

Entry information

Entry nameNIKR_PYRHO
AccessionPrimary (citable) accession number: O58316
Entry history
Integrated into UniProtKB/Swiss-Prot: November 2, 2001
Last sequence update: August 1, 1998
Last modified: December 14, 2011
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families