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O58316 (NIKR_PYRHO) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative nickel-responsive regulator
Gene names
Ordered Locus Names:PH0601
OrganismPyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) [Complete proteome] [HAMAP]
Taxonomic identifier70601 [NCBI]
Taxonomic lineageArchaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Pyrococcus

Protein attributes

Sequence length138 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Transcriptional regulator Potential. HAMAP MF_00476

Cofactor

Binds 1 nickel ion per subunit By similarity. HAMAP MF_00476

Sequence similarities

Belongs to the transcriptional regulatory CopG/NikR family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 138138Putative nickel-responsive regulator HAMAP MF_00476
PRO_0000139312

Sites

Metal binding781Nickel By similarity
Metal binding891Nickel By similarity
Metal binding911Nickel By similarity
Metal binding971Nickel By similarity

Secondary structure

1 .................. 138
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
O58316 [UniParc].

Last modified August 1, 1998. Version 1.
Checksum: A4B8715636C019FE

FASTA13815,806
        10         20         30         40         50         60 
MELIRFSISI PSKLLEKFDQ IIEEIGYENR SEAIRDLIRD FIIRHEWEVG NEEVAGTITI 

        70         80         90        100        110        120 
VYNHDEGDVV KALLDLQHEY LDEIISSLHV HMDEHNCLEV IVVKGEAKKI KMIADKLLSL 

       130 
KGVKHGKLVM TSTGKELV

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BA000001 Genomic DNA. Translation: BAA29690.1.
PIRE71175.
RefSeqNP_142565.1. NC_000961.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2BJ1X-ray3.00A/B1-138[»]
2BJ3X-ray2.20A/B/C/D1-138[»]
2BJ7X-ray2.10A/B1-138[»]
2BJ8X-ray2.10A/B1-138[»]
2BJ9X-ray3.00A/B1-138[»]
ProteinModelPortalO58316.
SMRO58316. Positions 1-138.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBPYRT00000001654; EBPYRP00000001654; EBPYRG00000001654.
GeneID1442936.
GenomeReviewsGene locus PH0601 in contig BA000001_GR.
KEGGpho:PH0601.
NMPDRfig|70601.1.peg.589.

Organism-specific databases

CMRSearch...

Phylogenomic databases

GeneTreeEBGT00050000022529.
HOGENOMHBG646378.
OMADEHNCLE.
PhylomeDBO58316.
ProtClustDBPRK04460.

Enzyme and pathway databases

BioCycPHOR70601:PH0601-MONOMER.

Family and domain databases

HAMAPMF_00476. NikR.
[Tree]
InterProIPR013321. Arc_rbn_hlx_hlx.
IPR002145. CopG_DNA-bd.
IPR022988. Ni_resp_reg_NikR.
IPR010985. Ribbon_hlx_hlx.
IPR014864. TF_NikR_Ni-bd_C.
[Graphical view]
Gene3DG3DSA:1.10.1220.10. Arc_rbn_hlx_hlx. 1 hit.
G3DSA:3.30.70.1150. NikR_bd_C. 1 hit.
KOK07722.
PfamPF08753. NikR_C. 1 hit.
PF01402. RHH_1. 1 hit.
[Graphical view]
SUPFAMSSF47598. Met_repress_like. 1 hit.
ProtoNetSearch...

Entry information

Entry nameNIKR_PYRHO
AccessionPrimary (citable) accession number: O58316
Entry history
Integrated into UniProtKB/Swiss-Prot: November 2, 2001
Last sequence update: August 1, 1998
Last modified: December 14, 2011
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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