O58038 (O58038_PYRHO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein PH0300 EMBL BAA29373.1

Gene names

Ordered Locus Names:

PH0300

Organism

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) [Complete proteome] [HAMAP] EMBL BAA29373.1

Taxonomic identifier

70601 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Pyrococcus › Pyrococcus horikoshii

Protein attributes

Sequence length	310 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	tRNA thio-modification Inferred from electronic annotation. Source: InterPro
Cellular_component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	O58038 [UniParc]. Last modified August 1, 1998. Version 1. Checksum: 87870CE4006C4246	FASTA	310	35,633
	10 20 30 40 50 60 MKCKFCSREA YIKIHYPKMY LCEEHFKEYF ERKVSRTIER YKLLTKDERI LVAVSGGKDS 70 80 90 100 110 120 AVTAYVLKKL GYNIECLHIN LGISGYSEKS EEYAKKQCKL IGAPLHIVRI KEILGYGIGE 130 140 150 160 170 180 VKTRRPPCSY CGLTKRYIMN KFAYDNGFDA IATGHNLDDE ASFLLNNILH WNTEYLAKGG 190 200 210 220 230 240 PILPQQGKFI KKVKPLYEVT EREVVAYALA VGLEYIVEEC PYARGATTLD MKGVLNELEE 250 260 270 280 290 300 KRPGTKFNFV RGYLKKKKLF EPEIKEKEIK ECKICRMPSS GDICAFCKFW GLKKEINFKV 310 SSTDEEPFGP

References

[1]

"Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3." Kawarabayasi Y., Sawada M., Horikawa H., Haikawa Y., Hino Y., Yamamoto S., Sekine M., Baba S., Kosugi H., Hosoyama A., Nagai Y., Sakai M., Ogura K., Otsuka R., Nakazawa H., Takamiya M., Ohfuku Y., Funahashi T. , Tanaka T., Kudoh Y., Yamazaki J., Kushida N., Oguchi A., Aoki K., Yoshizawa T., Nakamura Y., Robb F.T., Horikoshi K., Masuchi Y., Shizuya H., Kikuchi H. DNA Res. 5:55-76(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

BA000001 Genomic DNA. Translation: BAA29373.1.

PIR

F71455.

RefSeq

NP_142287.1. NC_000961.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3VRH	X-ray	2.10	A	1-310	[»]

ProteinModelPortal

O58038.

ModBase

Search...

Protein-protein interaction databases

STRING

70601.PH0300.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

BAA29373; BAA29373; BAA29373.

GeneID

1444182.

KEGG

pho:PH0300.

Organism-specific databases

CMR

Search...

Phylogenomic databases

eggNOG

COG0037.

HOGENOM

HOG000225863.

OMA

KFAYDNG.

ProtClustDB

CLSK254378.

Enzyme and pathway databases

BioCyc

PHOR70601:GJWR-283-MONOMER.

Family and domain databases

Gene3D

3.40.50.620. 1 hit.

InterPro

IPR012089. 2-thiocytidine_tRNA_synth_TtcA.
IPR014729. Rossmann-like_a/b/a_fold.
IPR011063. tRNA-lysidine/thiocyt_synth.
IPR000541. tRNA_2-thiolation_protein.
[Graphical view]

Pfam

PF01171. ATP_bind_3. 1 hit.
[Graphical view]

PIRSF

PIRSF004976. ATPase_YdaO. 1 hit.

TIGRFAMs

TIGR00269. TIGR00269. 1 hit.

ProtoNet

Search...

Entry information

Entry name

O58038_PYRHO

Accession

Primary (citable) accession number: O58038

Entry history

Integrated into UniProtKB/TrEMBL:	August 1, 1998
Last sequence update:	August 1, 1998
Last modified:	May 1, 2013
This is version 68 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)