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Protein
Submitted name:

Transcription factor PAX7E

Gene

pax7a

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi220 – 279HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

  • developmental pigmentation Source: ZFIN
  • multicellular organism development Source: UniProtKB-KW
  • regulation of transcription, DNA-templated Source: UniProtKB-UniRule
  • regulation of xanthophore differentiation Source: ZFIN
  • transcription, DNA-templated Source: UniProtKB-UniRule

Keywordsi

Molecular functionDevelopmental proteinSAAS annotation, DNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription factor PAX7EImported
Gene namesi
Name:pax7aImported
Synonyms:pax7Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-990415-201. pax7a.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliO57420.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini34 – 166PairedInterPro annotationAdd BLAST133
Domaini218 – 278HomeoboxInterPro annotationAdd BLAST61

Keywords - Domaini

HomeoboxPROSITE-ProRule annotation, Paired boxPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

HOVERGENiHBG009115.

Family and domain databases

CDDicd00086. homeodomain. 1 hit.
cd00131. PAX. 1 hit.
Gene3Di1.10.10.10. 2 hits.
InterProiView protein in InterPro
IPR009057. Homeobox-like.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR001523. Paired_dom.
IPR022106. Pax7_C.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00046. Homeobox. 1 hit.
PF00292. PAX. 1 hit.
PF12360. Pax7. 1 hit.
PRINTSiPR00027. PAIREDBOX.
SMARTiView protein in SMART
SM00389. HOX. 1 hit.
SM00351. PAX. 1 hit.
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiView protein in PROSITE
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
PS00034. PAIRED_1. 1 hit.
PS51057. PAIRED_2. 1 hit.

Sequencei

Sequence statusi: Complete.

O57420-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATLPGTVPR MMRPAPGQNY PRTGFPLEVS TPLGQGRVNQ LGGVFINGRP
60 70 80 90 100
LPNHIRHKIV EMAHHGIRPC VISRQLRVSH GCVSKILCRY QETGSIRPGA
110 120 130 140 150
IGGSKPRQVA TPDVEKRIEE YKRENPGMFS WEIRDKLLKD GVCDRGTVPS
160 170 180 190 200
GEASSVSSIS RVLRARFGKK DDDDECDKKD EDGEKKTKHS IDGILGDKGN
210 220 230 240 250
RTDEGSDVES EPDLPLKRKQ RRSRTTFTAE QLEELEKAFE RTHYPDIYTR
260 270 280 290 300
EELAQRTKLT EARVQVWFSN RRARWRKQAG ANQLAAFNHL LPGGFPPTGM
310 320 330 340 350
PTLPTYQLPE STYPSTTLSQ DGSSTLHRPQ PLPPSSMHQG GLSADSGSAY
360 370 380 390
GLSSNRHTFS SYSETFMSPT ASSNHMNPVS NGLSPQVSAA EPSFQ
Length:395
Mass (Da):43,746
Last modified:June 1, 1998 - v1
Checksum:i834CFF30A94CF07C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF014370 mRNA. Translation: AAC41257.1.

Similar proteinsi

Entry informationi

Entry nameiO57420_DANRE
AccessioniPrimary (citable) accession number: O57420
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: September 27, 2017
This is version 133 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)