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Protein
Submitted name:

Lymphotactin

Gene

scyc1

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-GGA-380108. Chemokine receptors bind chemokines.
R-GGA-416476. G alpha (q) signalling events.

Names & Taxonomyi

Protein namesi
Submitted name:
LymphotactinImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:scyc1Imported
Synonyms:XCL1Imported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Chromosome 1

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18Sequence analysisAdd BLAST18
ChainiPRO_500877863019 – 97Sequence analysisAdd BLAST79

Expressioni

Gene expression databases

BgeeiENSGALG00000015235.

Interactioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000024539.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini31 – 88SCYInterPro annotationAdd BLAST58

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410IZ5E. Eukaryota.
ENOG4111C3M. LUCA.
GeneTreeiENSGT00390000005120.
HOGENOMiHOG000036685.
HOVERGENiHBG102118.
KOiK05507.
OMAiNGIRICV.
OrthoDBiEOG091G15G5.
TreeFamiTF334888.

Family and domain databases

CDDicd00271. Chemokine_C. 1 hit.
InterProiIPR001811. Chemokine_IL8-like_dom.
IPR008105. Chemokine_XCL1/XCL2.
[Graphical view]
PfamiPF00048. IL8. 1 hit.
[Graphical view]
PRINTSiPR01731. LYMPHOTACTIN.
SMARTiSM00199. SCY. 1 hit.
[Graphical view]
SUPFAMiSSF54117. SSF54117. 1 hit.

Sequencei

Sequence statusi: Complete.

O57411-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLHATVLLV IVWLGVFALH TAEGSVASQS MRKLSCVNLS TQKVDIRSIV
60 70 80 90
NYEKQKVPVE AVMFITANGI RICVHPEQKW VQSAMKRIDR RRTTRRR
Length:97
Mass (Da):11,131
Last modified:June 1, 1998 - v1
Checksum:i6A0B3E5A5336D8EB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AADN04000147 Genomic DNA. No translation available.
AF006742 mRNA. Translation: AAB99904.1.
AJ242790 Genomic DNA. Translation: CAB92981.1.
RefSeqiNP_990377.1. NM_205046.1.
UniGeneiGga.542.

Genome annotation databases

EnsembliENSGALT00000024585; ENSGALP00000024539; ENSGALG00000015235.
GeneIDi395914.
KEGGigga:395914.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AADN04000147 Genomic DNA. No translation available.
AF006742 mRNA. Translation: AAB99904.1.
AJ242790 Genomic DNA. Translation: CAB92981.1.
RefSeqiNP_990377.1. NM_205046.1.
UniGeneiGga.542.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9031.ENSGALP00000024539.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSGALT00000024585; ENSGALP00000024539; ENSGALG00000015235.
GeneIDi395914.
KEGGigga:395914.

Organism-specific databases

CTDi6375.

Phylogenomic databases

eggNOGiENOG410IZ5E. Eukaryota.
ENOG4111C3M. LUCA.
GeneTreeiENSGT00390000005120.
HOGENOMiHOG000036685.
HOVERGENiHBG102118.
KOiK05507.
OMAiNGIRICV.
OrthoDBiEOG091G15G5.
TreeFamiTF334888.

Enzyme and pathway databases

ReactomeiR-GGA-380108. Chemokine receptors bind chemokines.
R-GGA-416476. G alpha (q) signalling events.

Miscellaneous databases

PROiO57411.

Gene expression databases

BgeeiENSGALG00000015235.

Family and domain databases

CDDicd00271. Chemokine_C. 1 hit.
InterProiIPR001811. Chemokine_IL8-like_dom.
IPR008105. Chemokine_XCL1/XCL2.
[Graphical view]
PfamiPF00048. IL8. 1 hit.
[Graphical view]
PRINTSiPR01731. LYMPHOTACTIN.
SMARTiSM00199. SCY. 1 hit.
[Graphical view]
SUPFAMiSSF54117. SSF54117. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiO57411_CHICK
AccessioniPrimary (citable) accession number: O57411
Secondary accession number(s): F1NRB5
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: November 30, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.