Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

O55764 (172L_IIV6) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Protein attributes

Sequence length606 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the SNF2/RAD54 helicase family.

Contains 1 helicase ATP-binding domain.

Contains 1 helicase C-terminal domain.

Ontologies

Keywords
   LigandATP-binding
Nucleotide-binding
   Molecular functionHelicase
Hydrolase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

DNA binding

Inferred from electronic annotation. Source: InterPro

helicase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 606606Putative helicase 172L
PRO_0000378036

Regions

Domain59 – 264206Helicase ATP-binding
Domain437 – 586150Helicase C-terminal
Nucleotide binding72 – 798ATP By similarity

Natural variations

Natural variant128 – 1292RD → KS.
Natural variant4461S → M.

Sequences

Sequence LengthMass (Da)Tools
O55764 [UniParc].

Last modified June 1, 1998. Version 1.
Checksum: CE96322F3801A6F5

FASTA60669,658
        10         20         30         40         50         60 
MADAMNELCN LTQHLQVDDD QLSNLKLKNG YSLFPHQEKV MLWMKYRENL TKKECRKEGE 

        70         80         90        100        110        120 
KTWGVRGGII SLCMGLGKTL TALAYSFQNK ASFPTLVITS KTVMHEWKTE GVEKFFDSDN 

       130        140        150        160        170        180 
IRVLYLHRDY IKNIDKISRD DIMTYDIVIT TYDVCLFACK KGNYFLQCFE MGEEQSLMKN 

       190        200        210        220        230        240 
KIVAIHTRKR KDANLPNLKG TAVIYGTPWE RVICDESQKF ANPKTMTYKC IMAVYGKYKW 

       250        260        270        280        290        300 
CLTGTPIRNY ETDIWAQLRF CGYKGVERSH DWNRNGQGLI AFKDHNLISA IFTMSYDDAQ 

       310        320        330        340        350        360 
MSLPEKTENN LTVKLEGQHK EIYEGILTET REMYKKMMND LCSFTYVLAM FTRLRQCAIA 

       370        380        390        400        410        420 
PYLITPDAKR NSKEKKNCSE WCLDKFGGAG IKSSKILKIV EIIKSVTLND NPNCNSNPKS 

       430        440        450        460        470        480 
LQLLAKEKAY SCFGSDYIKS SNFEISHPTK IIVFSMFTSC LDLLSEAIKE DYPNFKFVQV 

       490        500        510        520        530        540 
DGDTKNRSEL FDQFKNDINT QGLFLTYKVG SEGLNLTEAT HCICIEPWWT NAVHNQAKAR 

       550        560        570        580        590        600 
LWRTGQTKQV YVHNVIIEGS IEEKIVEICK GKDDMAASYL EGKERIKSPV RAPKLDKFTL 


GKMLGI 

« Hide

References

« Hide 'large scale' references
[1]"Analysis of the first complete DNA sequence of an invertebrate iridovirus: coding strategy of the genome of Chilo iridescent virus."
Jakob N.J., Mueller K., Bahr U., Darai G.
Virology 286:182-196(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]"Identification of the primary structure and the coding capacity of the genome of insect iridescent virus type 6 between the genome coordinates 0.310 and 0.347 (7990 bp)."
Sonntag K.-C., Schnitzler P., Janssen W., Darai G.
Intervirology 37:287-297(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]"Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes."
Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.
Virol. J. 4:11-11(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AF303741 Genomic DNA. Translation: AAA62412.2.
S75674 Genomic DNA. Translation: AAB33905.1.
PIRT03177.
RefSeqNP_149635.1. NC_003038.1.

3D structure databases

ProteinModelPortalO55764.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEO55764.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1732980.

Family and domain databases

Gene3D3.40.50.300. 3 hits.
InterProIPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
[Graphical view]
PfamPF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 4 hits.
PROSITEPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry name172L_IIV6
AccessionPrimary (citable) accession number: O55764
Secondary accession number(s): Q89442
Entry history
Integrated into UniProtKB/Swiss-Prot: June 16, 2009
Last sequence update: June 1, 1998
Last modified: April 16, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families