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Protein

E3 ubiquitin-protein ligase RNF13

Gene

Rnf13

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.1 Publication

Pathwayi: protein ubiquitination

This protein is involved in the pathway protein ubiquitination, which is part of Protein modification.
View all proteins of this organism that are known to be involved in the pathway protein ubiquitination and in Protein modification.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri240 – 282RING-type; atypicalPROSITE-ProRule annotationAdd BLAST43

GO - Molecular functioni

  • ligase activity Source: UniProtKB-KW
  • ubiquitin protein ligase activity Source: MGI
  • ubiquitin-protein transferase activity Source: UniProtKB
  • zinc ion binding Source: InterPro

GO - Biological processi

  • protein autoubiquitination Source: UniProtKB
Complete GO annotation...

Keywords - Molecular functioni

Ligase

Keywords - Biological processi

Ubl conjugation pathway

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

UniPathwayiUPA00143.

Names & Taxonomyi

Protein namesi
Recommended name:
E3 ubiquitin-protein ligase RNF13 (EC:6.3.2.-)
Alternative name(s):
RING finger protein 13
Gene namesi
Name:Rnf13
Synonyms:Rzf
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 3

Organism-specific databases

MGIiMGI:1346341. Rnf13.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini35 – 182LumenalSequence analysisAdd BLAST148
Transmembranei183 – 203HelicalSequence analysisAdd BLAST21
Topological domaini204 – 381CytoplasmicSequence analysisAdd BLAST178

GO - Cellular componenti

  • cytosol Source: UniProtKB-SubCell
  • integral component of membrane Source: UniProtKB-KW
  • late endosome membrane Source: UniProtKB
  • lysosomal membrane Source: UniProtKB
  • nuclear inner membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Endosome, Lysosome, Membrane, Nucleus

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Mutagenesisi266C → A: Loss of E3 ligase activity. 1 Publication1

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 34Sequence analysisAdd BLAST34
ChainiPRO_000005605535 – 381E3 ubiquitin-protein ligase RNF13Add BLAST347

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi88N-linked (GlcNAc...)Sequence analysis1

Post-translational modificationi

Auto-ubiquitinated.1 Publication
N-glycosylated and also modified with chondroitin sulfate.1 Publication

Keywords - PTMi

Glycoprotein, Ubl conjugation

Proteomic databases

MaxQBiO54965.
PaxDbiO54965.
PeptideAtlasiO54965.
PRIDEiO54965.

PTM databases

iPTMnetiO54965.
PhosphoSitePlusiO54965.

Expressioni

Tissue specificityi

Expressed in the brain, heart, kidney, liver and spleen. Higher expression in adult tissues compared to the embryonic counterparts.1 Publication

Gene expression databases

BgeeiENSMUSG00000036503.
CleanExiMM_RNF13.
ExpressionAtlasiO54965. baseline and differential.
GenevisibleiO54965. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000049331.

Structurei

3D structure databases

ProteinModelPortaliO54965.
SMRiO54965.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini64 – 160PAAdd BLAST97

Domaini

The RING-type zinc finger domain is required for E3 ligase activity.

Sequence similaritiesi

Contains 1 RING-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri240 – 282RING-type; atypicalPROSITE-ProRule annotationAdd BLAST43

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix, Zinc-finger

Phylogenomic databases

eggNOGiKOG4628. Eukaryota.
ENOG410Z5DF. LUCA.
GeneTreeiENSGT00760000119057.
HOGENOMiHOG000234362.
HOVERGENiHBG063762.
InParanoidiO54965.
KOiK15692.
OMAiNMTESSE.
OrthoDBiEOG091G08WC.
TreeFamiTF317486.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR003137. PA_domain.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF02225. PA. 1 hit.
PF13639. zf-RING_2. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: O54965-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MLLSIGMLML SATQVYTILT VQLFAFLNLL PVEADILAYN FENASQTFED
60 70 80 90 100
LPARFGYRLP AEGLKGFLIN SKPENACEPI VPPPLKDNSS GTFIVLIRRL
110 120 130 140 150
DCNFDIKVLN AQRAGYKAAI VHNVDSDDLI SMGSNDIDTL KKIDIPSVFI
160 170 180 190 200
GESSANSLKD EFTYEKGGHI ILVPELSLPL EYYLIPFLII VGICLILIVI
210 220 230 240 250
FMITKFVQDR HRNRRNRLRK DQLKKLPVHK FKKGDEYDVC AICLEEYEDG
260 270 280 290 300
DKLRILPCSH AYHCKCVDPW LTKTKKTCPV CKQKVVPSQG DSDSDTDSSQ
310 320 330 340 350
EENQVSEHTP LLPPSASART QSFGSLSESH SHHNMTESSD YEDDDNEETD
360 370 380
SSDADNEITD HSVVVQLQPN GEQDYNIANT V
Length:381
Mass (Da):42,732
Last modified:July 27, 2011 - v2
Checksum:i1E0EF4801A2C6FE8
GO
Isoform 2 (identifier: O54965-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     261-268: AYHCKCVD → GMSTHTVL
     269-381: Missing.

Show »
Length:268
Mass (Da):30,249
Checksum:iEB09D3ECF7660546
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti362S → I in AAC03770 (Ref. 1) Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_005749261 – 268AYHCKCVD → GMSTHTVL in isoform 2. 1 Publication8
Alternative sequenceiVSP_005750269 – 381Missing in isoform 2. 1 PublicationAdd BLAST113

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF037205 mRNA. Translation: AAC03770.1.
AF037206 mRNA. Translation: AAC03771.1.
AK158046 mRNA. Translation: BAE34334.1.
CH466530 Genomic DNA. Translation: EDL35322.1.
CH466530 Genomic DNA. Translation: EDL35326.1.
BC058182 mRNA. Translation: AAH58182.1.
CCDSiCCDS50913.1. [O54965-1]
CCDS79910.1. [O54965-2]
RefSeqiNP_001106884.1. NM_001113413.2. [O54965-1]
NP_036013.1. NM_011883.4. [O54965-2]
XP_006501520.1. XM_006501457.3. [O54965-1]
UniGeneiMm.274360.
Mm.445604.

Genome annotation databases

EnsembliENSMUST00000041826; ENSMUSP00000049331; ENSMUSG00000036503. [O54965-1]
ENSMUST00000199041; ENSMUSP00000142335; ENSMUSG00000036503. [O54965-2]
GeneIDi24017.
KEGGimmu:24017.
UCSCiuc008phj.3. mouse. [O54965-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF037205 mRNA. Translation: AAC03770.1.
AF037206 mRNA. Translation: AAC03771.1.
AK158046 mRNA. Translation: BAE34334.1.
CH466530 Genomic DNA. Translation: EDL35322.1.
CH466530 Genomic DNA. Translation: EDL35326.1.
BC058182 mRNA. Translation: AAH58182.1.
CCDSiCCDS50913.1. [O54965-1]
CCDS79910.1. [O54965-2]
RefSeqiNP_001106884.1. NM_001113413.2. [O54965-1]
NP_036013.1. NM_011883.4. [O54965-2]
XP_006501520.1. XM_006501457.3. [O54965-1]
UniGeneiMm.274360.
Mm.445604.

3D structure databases

ProteinModelPortaliO54965.
SMRiO54965.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000049331.

PTM databases

iPTMnetiO54965.
PhosphoSitePlusiO54965.

Proteomic databases

MaxQBiO54965.
PaxDbiO54965.
PeptideAtlasiO54965.
PRIDEiO54965.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000041826; ENSMUSP00000049331; ENSMUSG00000036503. [O54965-1]
ENSMUST00000199041; ENSMUSP00000142335; ENSMUSG00000036503. [O54965-2]
GeneIDi24017.
KEGGimmu:24017.
UCSCiuc008phj.3. mouse. [O54965-1]

Organism-specific databases

CTDi11342.
MGIiMGI:1346341. Rnf13.

Phylogenomic databases

eggNOGiKOG4628. Eukaryota.
ENOG410Z5DF. LUCA.
GeneTreeiENSGT00760000119057.
HOGENOMiHOG000234362.
HOVERGENiHBG063762.
InParanoidiO54965.
KOiK15692.
OMAiNMTESSE.
OrthoDBiEOG091G08WC.
TreeFamiTF317486.

Enzyme and pathway databases

UniPathwayiUPA00143.

Miscellaneous databases

PROiO54965.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000036503.
CleanExiMM_RNF13.
ExpressionAtlasiO54965. baseline and differential.
GenevisibleiO54965. MM.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR003137. PA_domain.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF02225. PA. 1 hit.
PF13639. zf-RING_2. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRNF13_MOUSE
AccessioniPrimary (citable) accession number: O54965
Secondary accession number(s): O54966, Q6PEA8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 6, 2002
Last sequence update: July 27, 2011
Last modified: November 2, 2016
This is version 117 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.